Variant report

Variant	rs188489177
Chromosome Location	chr3:136455385-136455386
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136453394..136456450-chr3:136469548..136472199,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MSL2-6	chr3:136455342-136456071	NONHSAT092281

Variant related genes	Relation type
ENSG00000118007	Chromatin interaction
ENSG00000261758	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv965214	chr3:136453872-136457900	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136432400-136468200	Weak transcription	Aorta	Aorta
2	chr3:136433200-136462600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:136438000-136458000	Weak transcription	Esophagus	oesophagus
4	chr3:136438800-136461200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:136445400-136460000	Weak transcription	Gastric	stomach
6	chr3:136446400-136460000	Weak transcription	K562	blood
7	chr3:136448000-136455600	Weak transcription	Fetal Lung	lung
8	chr3:136448000-136460800	Weak transcription	Brain Germinal Matrix	brain
9	chr3:136448200-136459800	Weak transcription	Osteobl	bone
10	chr3:136448200-136460000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:136448200-136467600	Weak transcription	HSMM	muscle
12	chr3:136448200-136467800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:136448200-136467800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:136448200-136467800	Weak transcription	HSMMtube	muscle
15	chr3:136448400-136455400	Weak transcription	NH-A	brain
16	chr3:136448400-136459800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:136448600-136460200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:136448600-136462800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:136448600-136463800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:136448600-136467600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:136449000-136470000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:136449800-136462400	Weak transcription	Dnd41	blood
23	chr3:136450200-136461200	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr3:136450400-136455400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr3:136450400-136460000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:136450400-136467800	Weak transcription	Psoas Muscle	Psoas
27	chr3:136450600-136455600	Weak transcription	Fetal Intestine Large	intestine
28	chr3:136450600-136467800	Weak transcription	Primary B cells from cord blood	blood
29	chr3:136450800-136455400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr3:136450800-136462800	Weak transcription	Thymus	Thymus
31	chr3:136450800-136467800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr3:136450800-136467800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr3:136450800-136467800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr3:136450800-136469000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr3:136451000-136467800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr3:136451400-136459600	Weak transcription	NHEK	skin
37	chr3:136451800-136457400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:136453200-136455800	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr3:136453200-136466000	Weak transcription	Placenta	Placenta
40	chr3:136453400-136455600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr3:136453600-136467800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr3:136453800-136455400	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr3:136453800-136455400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr3:136453800-136455400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:136453800-136455800	Weak transcription	GM12878-XiMat	blood
46	chr3:136453800-136459600	Weak transcription	A549	lung
47	chr3:136453800-136464000	Weak transcription	Primary hematopoietic stem cells	blood
48	chr3:136453800-136467600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr3:136454000-136455400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr3:136454000-136455400	Weak transcription	Brain Angular Gyrus	brain

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