Variant report

Variant	rs1885031
Chromosome Location	chr14:64888055-64888056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr14:64887962-64888285	MCF10A-Er-Src	breast:	n/a	chr14:64888221-64888230
2	MAX	chr14:64887899-64888200	Hela-S3	cervix:	n/a	n/a
3	MAX	chr14:64887778-64888186	Hela-S3	cervix:	n/a	n/a
4	MAX	chr14:64887752-64888314	SK-N-SH	brain:	n/a	n/a
5	MYC	chr14:64888019-64888196	MCF10A-Er-Src	breast:	n/a	n/a
6	MAZ	chr14:64887868-64888217	Hela-S3	cervix:	n/a	n/a
7	TCF7L2	chr14:64887857-64888146	Hela-S3	cervix:	n/a	n/a
8	GATA3	chr14:64887606-64888338	SK-N-SH	brain:	n/a	n/a
9	POLR2A	chr14:64887854-64888300	SK-N-SH	brain:	n/a	n/a
10	GTF2F1	chr14:64887962-64888243	Hela-S3	cervix:	n/a	n/a
11	FOS	chr14:64887992-64888275	MCF10A-Er-Src	breast:	n/a	chr14:64888221-64888230
12	PBX3	chr14:64887791-64888331	SK-N-SH	brain:	n/a	n/a
13	EP300	chr14:64887931-64888262	SK-N-SH_RA	brain:	n/a	n/a
14	STAT3	chr14:64887991-64888207	MCF10A-Er-Src	breast:	n/a	n/a
15	STAT3	chr14:64888009-64888254	MCF10A-Er-Src	breast:	n/a	n/a
16	FOS	chr14:64887960-64888267	MCF10A-Er-Src	breast:	n/a	chr14:64888221-64888230
17	TCF12	chr14:64887669-64888466	SK-N-SH	brain:	n/a	n/a
18	PBX3	chr14:64887745-64888369	SK-N-SH	brain:	n/a	n/a
19	REST	chr14:64887898-64888170	SK-N-SH	brain:	n/a	n/a
20	STAT3	chr14:64888002-64888302	MCF10A-Er-Src	breast:	n/a	n/a
21	GATA3	chr14:64887497-64888364	SK-N-SH	brain:	n/a	n/a
22	USF2	chr14:64887936-64888176	Hela-S3	cervix:	n/a	n/a
23	STAT3	chr14:64888007-64888254	MCF10A-Er-Src	breast:	n/a	n/a
24	EP300	chr14:64887914-64888286	SK-N-SH_RA	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:64887407..64889667-chr14:64969636..64971328,2	MCF-7	breast:
2	chr14:64882231..64884012-chr14:64887446..64889733,2	K562	blood:
3	chr14:64885944..64888170-chr14:64968112..64970499,2	MCF-7	breast:
4	chr14:64860617..64863426-chr14:64887492..64890180,3	MCF-7	breast:

Variant related genes	Relation type
MTHFD1	TF binding region
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

rs_ID	r²[population]
rs11620680	0.87[CEU][hapmap]
rs11622591	1.00[CEU][hapmap]
rs11627525	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs11629135	0.87[CEU][hapmap]
rs2236222	0.87[CEU][hapmap]
rs3742609	0.87[CEU][hapmap]
rs8003567	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs8012229	0.85[CEU][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs1885031	ZBTB25	cis	multi-tissue	Pritchard
rs1885031	ZBTB25	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64856000-64913000	Weak transcription	Small Intestine	intestine
2	chr14:64856200-64931200	Weak transcription	Stomach Mucosa	stomach
3	chr14:64861800-64890600	Weak transcription	Colonic Mucosa	Colon
4	chr14:64861800-64931600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:64862600-64898200	Weak transcription	Fetal Heart	heart
6	chr14:64862600-64905200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:64867200-64927000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:64867200-64929600	Strong transcription	Dnd41	blood
9	chr14:64874000-64928400	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:64875400-64912000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr14:64875400-64913200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:64876400-64911800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:64876800-64888600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr14:64877000-64888800	Strong transcription	Fetal Intestine Small	intestine
15	chr14:64877000-64902000	Strong transcription	Fetal Stomach	stomach
16	chr14:64877000-64927000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:64877000-64929400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr14:64877200-64895800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr14:64877400-64928200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:64877800-64889800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:64877800-64890800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:64877800-64901000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr14:64877800-64905000	Strong transcription	Adipose Nuclei	Adipose
24	chr14:64877800-64911200	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr14:64877800-64929200	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr14:64878200-64921200	Strong transcription	Liver	Liver
27	chr14:64878600-64899600	Strong transcription	Duodenum Mucosa	Duodenum
28	chr14:64878600-64912200	Strong transcription	Fetal Muscle Trunk	muscle
29	chr14:64878800-64888200	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr14:64878800-64896600	Strong transcription	Fetal Intestine Large	intestine
31	chr14:64878800-64912000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:64879000-64889800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
33	chr14:64879000-64890200	Strong transcription	Primary B cells from cord blood	blood
34	chr14:64879600-64910200	Strong transcription	Primary B cells from peripheral blood	blood
35	chr14:64880400-64894400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr14:64881400-64896400	Strong transcription	H9 Cell Line	embryonic stem cell
37	chr14:64881600-64895000	Strong transcription	HMEC	breast
38	chr14:64881600-64895400	Strong transcription	HepG2	liver
39	chr14:64881600-64912600	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr14:64881600-64929000	Strong transcription	Fetal Thymus	thymus
41	chr14:64881800-64888200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr14:64881800-64888200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr14:64881800-64888200	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr14:64881800-64889200	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr14:64881800-64889400	Strong transcription	GM12878-XiMat	blood
46	chr14:64881800-64889600	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr14:64881800-64889800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:64881800-64890000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr14:64881800-64890600	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr14:64881800-64891600	Strong transcription	Primary hematopoietic stem cells	blood

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