Variant report

Variant	rs188512563
Chromosome Location	chr16:65072733-65072734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1831	chr16:65071976-65106105	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65039000-65089600	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65039600-65079800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr16:65040600-65086000	Weak transcription	HMEC	breast
4	chr16:65046400-65075600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr16:65047200-65078400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr16:65056800-65072800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr16:65058600-65104400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr16:65059800-65078400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr16:65062400-65074800	Weak transcription	Aorta	Aorta
10	chr16:65065800-65074800	Weak transcription	NHDF-Ad	bronchial
11	chr16:65066200-65074800	Weak transcription	HSMM	muscle
12	chr16:65066800-65076800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr16:65066800-65078400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr16:65068200-65073000	Strong transcription	Osteobl	bone
15	chr16:65069200-65072800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr16:65069200-65075200	Weak transcription	HSMMtube	muscle
17	chr16:65069800-65105000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr16:65070000-65073000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr16:65070600-65075000	Weak transcription	Ovary	ovary
20	chr16:65070800-65073000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr16:65071400-65072800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr16:65071400-65072800	Enhancers	Fetal Brain Male	brain
23	chr16:65071400-65075000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr16:65071600-65072800	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr16:65071800-65072800	Enhancers	Fetal Brain Female	brain
26	chr16:65071800-65072800	Enhancers	Fetal Stomach	stomach
27	chr16:65071800-65073200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr16:65071800-65077400	Weak transcription	NHLF	lung
29	chr16:65072000-65072800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr16:65072000-65072800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
31	chr16:65072000-65072800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr16:65072000-65072800	Enhancers	Colon Smooth Muscle	Colon
33	chr16:65072000-65074400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr16:65072200-65072800	Enhancers	Brain Hippocampus Middle	brain
35	chr16:65072200-65072800	Weak transcription	Fetal Muscle Leg	muscle
36	chr16:65072200-65073200	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr16:65072200-65074800	Weak transcription	NH-A	brain
38	chr16:65072400-65072800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr16:65072400-65072800	Enhancers	Brain Anterior Caudate	brain
40	chr16:65072400-65072800	Enhancers	Brain Cingulate Gyrus	brain
41	chr16:65072400-65072800	Enhancers	Brain Substantia Nigra	brain
42	chr16:65072400-65072800	Enhancers	Fetal Kidney	kidney
43	chr16:65072400-65073000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr16:65072400-65074800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr16:65072600-65073000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr16:65072600-65073000	Strong transcription	Fetal Lung	lung
47	chr16:65072600-65073000	Enhancers	Spleen	Spleen
48	chr16:65072600-65075200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr16:65072600-65075800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr16:65072600-65076200	Weak transcription	Brain Angular Gyrus	brain

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