Variant report

Variant	rs188515161
Chromosome Location	chrX:5644029-5644030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869027	chrX:5052974-6043003	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv3395599	chrX:5373033-5729174	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv515922	chrX:5602110-5666329	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	esv2830398	chrX:5618240-5882060	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv949393	chrX:5637763-5883977	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:5641400-5644400	Active TSS	Adipose Nuclei	Adipose
2	chrX:5643400-5645000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chrX:5643600-5644200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chrX:5643800-5644200	Active TSS	Rectal Mucosa Donor 29	rectum
5	chrX:5643800-5644200	Enhancers	NHDF-Ad	bronchial
6	chrX:5643800-5645200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chrX:5644000-5644200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chrX:5644000-5644200	Flanking Active TSS	HMEC	breast
9	chrX:5644000-5644200	Enhancers	HSMM	muscle
10	chrX:5644000-5644400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chrX:5644000-5644400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chrX:5644000-5644400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chrX:5644000-5644400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chrX:5644000-5644400	Enhancers	NH-A	brain
15	chrX:5644000-5645000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chrX:5644000-5645000	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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