Variant report

Variant rs188519257
Chromosome Location chr2:54895572-54895573
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54841200-54897800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr2:54846400-54895600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
3 chr2:54846400-54896600 Strong transcription Primary hematopoietic stem cells short term culture blood
4 chr2:54846600-54898000 Strong transcription Dnd41 blood
5 chr2:54861800-54898600 Strong transcription Primary T regulatory cells fromperipheralblood blood
6 chr2:54862200-54896600 Strong transcription Primary hematopoietic stem cells blood
7 chr2:54862600-54898400 Strong transcription Primary T cells fromperipheralblood blood
8 chr2:54863000-54898600 Strong transcription Primary T helper cells fromperipheralblood blood
9 chr2:54863000-54899400 Strong transcription Primary T cells from cord blood blood
10 chr2:54863600-54897000 Strong transcription Primary T helper naive cells from peripheral blood blood
11 chr2:54863800-54897400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
12 chr2:54863800-54898600 Strong transcription Primary T helper naive cells fromperipheralblood blood
13 chr2:54865400-54898400 Strong transcription Primary T killer naive cells fromperipheralblood blood
14 chr2:54865800-54898200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
15 chr2:54866400-54897200 Strong transcription Primary B cells from cord blood blood
16 chr2:54867200-54897800 Strong transcription Primary B cells from peripheral blood blood
17 chr2:54867200-54898200 Strong transcription Primary T helper cells PMA-I stimulated --
18 chr2:54868800-54898600 Strong transcription iPS-18 Cell Line embryonic stem cell
19 chr2:54869000-54896400 Strong transcription Colonic Mucosa Colon
20 chr2:54869600-54898600 Strong transcription Fetal Thymus thymus
21 chr2:54869800-54897600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
22 chr2:54878400-54897000 Strong transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr2:54879600-54898400 Strong transcription GM12878-XiMat blood
24 chr2:54880200-54898400 Strong transcription H1 Cell Line embryonic stem cell
25 chr2:54880200-54898400 Strong transcription Thymus Thymus
26 chr2:54883000-54899400 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr2:54885000-54896400 Strong transcription Hela-S3 cervix
28 chr2:54886800-54896600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr2:54889200-54898600 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr2:54890000-54896400 Genic enhancers Liver Liver
31 chr2:54890800-54895600 Genic enhancers Left Ventricle heart
32 chr2:54890800-54898200 Genic enhancers Brain Inferior Temporal Lobe brain
33 chr2:54891000-54899400 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
34 chr2:54891200-54899800 Weak transcription ES-WA7 Cell Line embryonic stem cell
35 chr2:54891400-54895600 Genic enhancers Lung lung
36 chr2:54891400-54896000 Genic enhancers Foreskin Melanocyte Primary Cells skin01 Skin
37 chr2:54891400-54896600 Genic enhancers Placenta Placenta
38 chr2:54891600-54895800 Enhancers Right Atrium heart
39 chr2:54891600-54898000 Genic enhancers Brain Hippocampus Middle brain
40 chr2:54891800-54897800 Genic enhancers NHLF lung
41 chr2:54892000-54897600 Genic enhancers Fetal Lung lung
42 chr2:54892000-54897800 Genic enhancers Brain Cingulate Gyrus brain
43 chr2:54892200-54895600 Genic enhancers Fetal Stomach stomach
44 chr2:54892200-54897600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr2:54892400-54897800 Genic enhancers Brain Substantia Nigra brain
46 chr2:54892400-54897800 Genic enhancers NHDF-Ad bronchial
47 chr2:54892400-54898000 Genic enhancers Rectal Smooth Muscle rectum
48 chr2:54892400-54898200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
49 chr2:54892400-54898200 Genic enhancers Adipose Nuclei Adipose
50 chr2:54892600-54895600 Genic enhancers Right Ventricle heart

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