Variant report

Variant	rs1885430
Chromosome Location	chr9:13993673-13993674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1022762	0.81[ASN][1000 genomes]
rs10756521	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10756522	0.80[EUR][1000 genomes]
rs10756523	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10810069	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10961316	0.82[ASN][1000 genomes]
rs1981291	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2093429	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2104156	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4741342	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7025591	0.83[EUR][1000 genomes]
rs7025997	0.83[EUR][1000 genomes]
rs7034080	0.81[ASN][1000 genomes]
rs9696998	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv892594	chr9:13970372-14005286	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13990400-13994200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr9:13991600-13994600	Enhancers	Psoas Muscle	Psoas
3	chr9:13991600-13994800	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr9:13991600-13995000	Enhancers	Fetal Muscle Leg	muscle
5	chr9:13991800-13994000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:13991800-13994000	Enhancers	Aorta	Aorta
7	chr9:13992800-13994800	Enhancers	Fetal Kidney	kidney
8	chr9:13993200-13994000	Enhancers	Brain Anterior Caudate	brain
9	chr9:13993200-13994600	Enhancers	Adipose Nuclei	Adipose
10	chr9:13993600-13994000	Enhancers	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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