Variant report

Variant	rs1885788
Chromosome Location	chr10:112638858-112638859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:112637932-112638930	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:112638439-112639024	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:112636714..112640059-chr10:112651978..112655187,3	K562	blood:
2	chr10:112630933..112635987-chr10:112638238..112642004,12	MCF-7	breast:
3	chr10:112582606..112584784-chr10:112635301..112639130,3	MCF-7	breast:

Variant related genes	Relation type
PDCD4	TF binding region
ENSG00000150593	Chromatin interaction
ENSG00000203867	Chromatin interaction
ENSG00000203497	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1322996	1.00[AFR][1000 genomes]
rs1885789	1.00[AFR][1000 genomes]
rs7068228	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1035602	chr10:112636053-112781413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112632800-112643800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:112632800-112643800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:112632800-112678000	Weak transcription	Lung	lung
4	chr10:112632800-112678200	Weak transcription	Spleen	Spleen
5	chr10:112633200-112639000	Weak transcription	Gastric	stomach
6	chr10:112633200-112643800	Weak transcription	Esophagus	oesophagus
7	chr10:112633200-112643800	Weak transcription	Left Ventricle	heart
8	chr10:112633200-112656000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:112633200-112656800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:112633400-112662000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:112633600-112641000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:112633600-112641200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr10:112633600-112641200	Weak transcription	Brain Angular Gyrus	brain
14	chr10:112633600-112653800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:112633600-112655200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr10:112633800-112643800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:112633800-112659800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:112634000-112639000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:112634000-112639200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:112634000-112640800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:112634000-112641000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:112634000-112641000	Weak transcription	Aorta	Aorta
23	chr10:112634000-112641000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr10:112634000-112643400	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:112634000-112643800	Weak transcription	Thymus	Thymus
26	chr10:112634000-112647000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:112634000-112649400	Weak transcription	Brain Hippocampus Middle	brain
28	chr10:112634000-112655000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:112634000-112655800	Weak transcription	Psoas Muscle	Psoas
30	chr10:112634000-112656000	Weak transcription	Right Ventricle	heart
31	chr10:112634000-112662400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:112634200-112639600	Weak transcription	Stomach Mucosa	stomach
33	chr10:112634200-112639800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:112634200-112640400	Weak transcription	Colonic Mucosa	Colon
35	chr10:112634200-112643600	Weak transcription	Brain Germinal Matrix	brain
36	chr10:112634200-112643600	Weak transcription	Right Atrium	heart
37	chr10:112634200-112646600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr10:112634200-112655800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:112634400-112643200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr10:112634400-112643400	Weak transcription	NHLF	lung
41	chr10:112634600-112643400	Weak transcription	A549	lung
42	chr10:112634600-112656600	Weak transcription	NHEK	skin
43	chr10:112634800-112639200	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr10:112634800-112639800	Weak transcription	Fetal Brain Female	brain
45	chr10:112634800-112641000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr10:112634800-112641000	Weak transcription	HSMMtube	muscle
47	chr10:112634800-112643400	Weak transcription	K562	blood
48	chr10:112634800-112643800	Weak transcription	Fetal Stomach	stomach
49	chr10:112634800-112646000	Weak transcription	Fetal Brain Male	brain
50	chr10:112634800-112661800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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