The 2.0 version of rSNPBase

Variant report

Variant rs188605418
Chromosome Location chr3:49442019-49442020
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:49399000-49448000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr3:49406000-49445200 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr3:49413200-49443000 Weak transcription Brain Cingulate Gyrus brain
4 chr3:49413200-49447400 Weak transcription H9 Cell Line embryonic stem cell
5 chr3:49422200-49443000 Weak transcription Rectal Smooth Muscle rectum
6 chr3:49424200-49443400 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr3:49426000-49444000 Weak transcription Esophagus oesophagus
8 chr3:49426200-49443000 Weak transcription NHLF lung
9 chr3:49427000-49448400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr3:49429000-49447200 Weak transcription iPS-18 Cell Line embryonic stem cell
11 chr3:49431200-49447200 Weak transcription H1 Cell Line embryonic stem cell
12 chr3:49433800-49444000 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr3:49433800-49447200 Weak transcription Colonic Mucosa Colon
14 chr3:49434200-49442800 Weak transcription Brain Germinal Matrix brain
15 chr3:49434800-49443000 Weak transcription Cortex derived primary cultured neurospheres brain
16 chr3:49435400-49442400 Strong transcription Fetal Intestine Small intestine
17 chr3:49435400-49445600 Weak transcription Fetal Brain Male brain
18 chr3:49435400-49447000 Weak transcription HSMMtube muscle
19 chr3:49435400-49447800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr3:49435600-49443000 Weak transcription NHDF-Ad bronchial
21 chr3:49435600-49443200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr3:49435800-49443000 Weak transcription Small Intestine intestine
23 chr3:49435800-49446800 Weak transcription Brain Angular Gyrus brain
24 chr3:49436600-49443200 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
25 chr3:49438200-49442800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr3:49438200-49443000 Weak transcription Liver Liver
27 chr3:49438200-49443800 Weak transcription K562 blood
28 chr3:49438200-49444000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
29 chr3:49438200-49446800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr3:49438800-49444000 Weak transcription Right Ventricle heart
31 chr3:49439000-49442200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr3:49439000-49442800 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr3:49439000-49443200 Weak transcription Primary B cells from cord blood blood
34 chr3:49439000-49447200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
35 chr3:49439200-49443600 Weak transcription ES-I3 Cell Line embryonic stem cell
36 chr3:49439400-49443000 Weak transcription Brain Substantia Nigra brain
37 chr3:49439400-49443000 Weak transcription Left Ventricle heart
38 chr3:49439400-49443400 Weak transcription Brain Hippocampus Middle brain
39 chr3:49439400-49444200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
40 chr3:49439600-49443000 Weak transcription Brain Anterior Caudate brain
41 chr3:49439600-49443000 Weak transcription Duodenum Mucosa Duodenum
42 chr3:49439600-49443000 Weak transcription HSMM muscle
43 chr3:49439600-49443000 Weak transcription NH-A brain
44 chr3:49439600-49443200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
45 chr3:49439600-49443200 Weak transcription Gastric stomach
46 chr3:49439600-49443600 Strong transcription Primary hematopoietic stem cells short term culture blood
47 chr3:49439600-49443600 Weak transcription HepG2 liver
48 chr3:49439600-49444600 Weak transcription Fetal Heart heart
49 chr3:49439600-49447200 Weak transcription HUES48 Cell Line embryonic stem cell
50 chr3:49439800-49443000 Weak transcription Primary T killer memory cells from peripheral blood blood

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Last update: Aug 31, 2015