Variant report

Variant	rs188610241
Chromosome Location	chr3:49304958-49304959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49207602..49209578-chr3:49304672..49307011,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185909	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008750	chr3:49208815-49362401	Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv963481	chr3:49304260-49325571	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49276400-49306400	Weak transcription	Spleen	Spleen
2	chr3:49286400-49313600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:49292800-49306800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:49293000-49313400	Weak transcription	HSMM	muscle
5	chr3:49293600-49306400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:49293800-49305400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:49293800-49306400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr3:49293800-49307000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr3:49293800-49308400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:49294000-49306600	Weak transcription	Placenta	Placenta
11	chr3:49294000-49308400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr3:49294800-49306800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:49294800-49313400	Weak transcription	NHLF	lung
14	chr3:49295000-49306600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:49295000-49313200	Weak transcription	Right Ventricle	heart
16	chr3:49298400-49307000	Weak transcription	Lung	lung
17	chr3:49299000-49313600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:49299400-49306400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr3:49299400-49306600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr3:49299400-49307000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:49300200-49306600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:49300200-49313400	Weak transcription	HUVEC	blood vessel
23	chr3:49300800-49307000	Weak transcription	Aorta	Aorta
24	chr3:49301200-49306800	Weak transcription	Fetal Brain Female	brain
25	chr3:49301600-49306600	Weak transcription	Primary B cells from cord blood	blood
26	chr3:49301800-49306600	Weak transcription	Gastric	stomach
27	chr3:49301800-49306600	Weak transcription	Dnd41	blood
28	chr3:49301800-49315600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:49302000-49307000	Weak transcription	Thymus	Thymus
30	chr3:49302200-49306600	Weak transcription	Fetal Thymus	thymus
31	chr3:49302200-49308600	Enhancers	Fetal Intestine Large	intestine
32	chr3:49302200-49311800	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr3:49302800-49306200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:49302800-49313400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr3:49303000-49306600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:49303200-49305000	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr3:49303400-49305000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:49303400-49305000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:49303400-49305000	Enhancers	Brain Angular Gyrus	brain
40	chr3:49303400-49305000	Enhancers	Brain Cingulate Gyrus	brain
41	chr3:49303400-49305000	Enhancers	Fetal Muscle Leg	muscle
42	chr3:49303400-49305000	Enhancers	Right Atrium	heart
43	chr3:49303400-49305000	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr3:49303400-49305600	Enhancers	Ovary	ovary
45	chr3:49303400-49306400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr3:49303400-49306800	Weak transcription	Pancreas	Pancrea
47	chr3:49303400-49309600	Genic enhancers	Fetal Intestine Small	intestine
48	chr3:49303600-49307000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr3:49303600-49307000	Weak transcription	Esophagus	oesophagus
50	chr3:49303600-49315600	Weak transcription	HepG2	liver

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