Variant report

Variant	rs1886133
Chromosome Location	chr9:110032160-110032161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110030231..110032782-chr9:110035060..110038842,3	MCF-7	breast:
2	chr9:110021549..110024530-chr9:110031690..110034147,2	MCF-7	breast:
3	chr9:110030757..110033354-chr9:110044206..110047003,3	MCF-7	breast:
4	chr9:110031224..110033017-chr9:110046490..110048325,2	K562	blood:
5	chr9:110007873..110010290-chr9:110031092..110033178,2	K562	blood:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11573674	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110028200-110032800	Weak transcription	Pancreas	Pancrea
2	chr9:110029400-110032800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:110029400-110035800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:110029800-110032200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:110031400-110032200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:110031400-110033400	Enhancers	Adipose Nuclei	Adipose
7	chr9:110031600-110032400	Enhancers	Fetal Kidney	kidney
8	chr9:110031600-110032600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:110031600-110033000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr9:110031600-110033000	Enhancers	Fetal Intestine Small	intestine
11	chr9:110031600-110033200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:110031600-110033200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:110031600-110033200	Enhancers	Fetal Intestine Large	intestine
14	chr9:110031600-110033200	Enhancers	Placenta	Placenta
15	chr9:110031600-110033200	Enhancers	Ovary	ovary
16	chr9:110031600-110033200	Enhancers	HSMMtube	muscle
17	chr9:110031600-110033200	Enhancers	NHLF	lung
18	chr9:110031600-110033200	Enhancers	Osteobl	bone
19	chr9:110031600-110033400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:110031600-110033400	Enhancers	HMEC	breast
21	chr9:110031600-110033400	Enhancers	NHDF-Ad	bronchial
22	chr9:110031800-110032200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:110031800-110032600	Enhancers	Liver	Liver
24	chr9:110031800-110032600	Weak transcription	HSMM	muscle
25	chr9:110031800-110033000	Flanking Active TSS	A549	lung
26	chr9:110031800-110033000	Flanking Active TSS	HepG2	liver
27	chr9:110031800-110033200	Enhancers	Fetal Lung	lung
28	chr9:110031800-110033200	Enhancers	Hela-S3	cervix
29	chr9:110032000-110033400	Enhancers	Stomach Mucosa	stomach

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