The 2.0 version of rSNPBase

Variant report

Variant rs188617535
Chromosome Location chr5:5495526-5495527
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:5477200-5497600 Weak transcription Brain Angular Gyrus brain
2 chr5:5482800-5497600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr5:5490600-5497200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr5:5490600-5497600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr5:5490800-5496400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr5:5491400-5496400 Weak transcription Hela-S3 cervix
7 chr5:5492800-5497400 Weak transcription Breast Myoepithelial Primary Cells Breast
8 chr5:5493600-5495600 Enhancers Primary Natural Killer cells fromperipheralblood blood
9 chr5:5493800-5495800 Bivalent Enhancer Foreskin Melanocyte Primary Cells skin01 Skin
10 chr5:5494000-5495600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
11 chr5:5494000-5495600 Enhancers Primary T helper cells PMA-I stimulated --
12 chr5:5494000-5495600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
13 chr5:5494000-5496200 Enhancers Psoas Muscle Psoas
14 chr5:5494000-5496400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr5:5494400-5496200 Weak transcription Brain Substantia Nigra brain
16 chr5:5494600-5495600 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
17 chr5:5494800-5495600 Enhancers Primary B cells from cord blood blood
18 chr5:5494800-5495800 Bivalent Enhancer Fetal Muscle Trunk muscle
19 chr5:5494800-5497200 Weak transcription HMEC breast
20 chr5:5494800-5503800 Weak transcription GM12878-XiMat blood
21 chr5:5495000-5495600 Enhancers Gastric stomach
22 chr5:5495200-5495600 Bivalent Enhancer Primary T cells fromperipheralblood blood
23 chr5:5495200-5495600 Enhancers Primary T helper cells fromperipheralblood blood
24 chr5:5495200-5495600 Bivalent Enhancer Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr5:5495200-5496400 Weak transcription Fetal Brain Female brain
26 chr5:5495200-5497000 Weak transcription Colon Smooth Muscle Colon
27 chr5:5495200-5497200 Weak transcription Brain Anterior Caudate brain
28 chr5:5495200-5498400 Enhancers Brain Germinal Matrix brain
29 chr5:5495400-5495600 Bivalent Enhancer H1 Cell Line embryonic stem cell
30 chr5:5495400-5495600 Bivalent Enhancer HUES64 Cell Line embryonic stem cell
31 chr5:5495400-5495600 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
32 chr5:5495400-5495600 Bivalent Enhancer iPS-18 Cell Line embryonic stem cell
33 chr5:5495400-5495600 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
34 chr5:5495400-5495600 Enhancers Brain Cingulate Gyrus brain
35 chr5:5495400-5495800 Weak transcription Brain Hippocampus Middle brain
36 chr5:5495400-5496000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr5:5495400-5496600 Weak transcription Brain Inferior Temporal Lobe brain
38 chr5:5495400-5496600 Weak transcription Fetal Brain Male brain
39 chr5:5495400-5496800 Enhancers Adipose Nuclei Adipose
40 chr5:5495400-5497000 Weak transcription Primary B cells from peripheral blood blood
41 chr5:5495400-5497200 Weak transcription Primary T helper naive cells from peripheral blood blood
42 chr5:5495400-5497200 Weak transcription Liver Liver
43 chr5:5495400-5497200 Enhancers Skeletal Muscle Male skeletal muscle
44 chr5:5495400-5497200 Weak transcription Stomach Smooth Muscle stomach
45 chr5:5495400-5497600 Weak transcription H9 Cell Line embryonic stem cell
46 chr5:5495400-5497600 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr5:5495400-5497800 Enhancers Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015