Variant report

Variant	rs188628709
Chromosome Location	chr6:35152053-35152054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
2	chr6:35150577..35155004-chr6:35155292..35158233,5	MCF-7	breast:
3	chr6:35113948..35118974-chr6:35150125..35153891,4	MCF-7	breast:
4	chr6:35152047..35154652-chr6:35168732..35171108,2	MCF-7	breast:
5	chr6:35151150..35153092-chr6:35452515..35454957,2	MCF-7	breast:
6	chr6:35144082..35146423-chr6:35150116..35152992,2	K562	blood:
7	chr6:35148681..35155694-chr6:35156262..35164857,12	MCF-7	breast:
8	chr6:35146861..35148927-chr6:35151720..35154561,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000124678	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35146800-35154400	Enhancers	Fetal Heart	heart
2	chr6:35147600-35152400	Weak transcription	Lung	lung
3	chr6:35149800-35154200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:35149800-35154400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:35149800-35158000	Weak transcription	Aorta	Aorta
6	chr6:35150000-35152600	Weak transcription	NHLF	lung
7	chr6:35150000-35153000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:35150000-35153000	Weak transcription	HSMM	muscle
9	chr6:35150000-35153400	Weak transcription	Spleen	Spleen
10	chr6:35150200-35152400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:35150200-35152400	Weak transcription	Fetal Intestine Large	intestine
12	chr6:35150200-35152400	Enhancers	A549	lung
13	chr6:35150200-35152400	Weak transcription	NH-A	brain
14	chr6:35150200-35152400	Weak transcription	NHDF-Ad	bronchial
15	chr6:35150200-35152600	Weak transcription	Fetal Intestine Small	intestine
16	chr6:35150200-35152600	Weak transcription	Stomach Mucosa	stomach
17	chr6:35150200-35153000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:35150200-35153400	Weak transcription	Right Atrium	heart
19	chr6:35150200-35154000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:35150200-35154200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:35150200-35156600	Weak transcription	Esophagus	oesophagus
22	chr6:35150400-35152200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:35150400-35152200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:35150400-35152400	Weak transcription	HMEC	breast
25	chr6:35150400-35153200	Weak transcription	Right Ventricle	heart
26	chr6:35150600-35154200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:35150800-35154000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:35151000-35153600	Enhancers	K562	blood
29	chr6:35151000-35154200	Enhancers	Osteobl	bone
30	chr6:35151200-35152600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:35151200-35154200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:35151400-35154000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:35151600-35152800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:35151600-35152800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:35151800-35152600	Enhancers	Hela-S3	cervix
36	chr6:35151800-35152800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:35151800-35154000	Enhancers	HepG2	liver
38	chr6:35151800-35159600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:35152000-35153200	Enhancers	NHEK	skin
40	chr6:35152000-35154000	Enhancers	Left Ventricle	heart

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