Variant report

Variant	rs188650540
Chromosome Location	chr9:102899686-102899687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102898852..102899861-chr9:102978063..102979186,4	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	esv3449837	chr9:102899451-102899736	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102862200-102902400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:102867000-102899800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:102869200-102901800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:102870000-102902200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:102873800-102900200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr9:102874200-102902600	Weak transcription	HMEC	breast
7	chr9:102874200-102902600	Weak transcription	NHEK	skin
8	chr9:102874200-102912600	Weak transcription	Osteobl	bone
9	chr9:102874200-102937600	Weak transcription	Aorta	Aorta
10	chr9:102879800-102935000	Weak transcription	Ovary	ovary
11	chr9:102881400-102902200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr9:102883000-102937600	Weak transcription	Fetal Intestine Large	intestine
13	chr9:102883800-102928400	Weak transcription	Primary T cells from cord blood	blood
14	chr9:102884400-102901800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:102885200-102932600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:102885600-102900400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr9:102886000-102931600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:102887000-102901800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr9:102887800-102903400	Weak transcription	Pancreas	Pancrea
20	chr9:102887800-102922200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:102888000-102902600	Weak transcription	HepG2	liver
22	chr9:102889000-102902000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:102889000-102907000	Weak transcription	K562	blood
24	chr9:102889200-102901600	Weak transcription	Hela-S3	cervix
25	chr9:102889200-102936000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr9:102889600-102934600	Weak transcription	Fetal Intestine Small	intestine
27	chr9:102891000-102904600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:102891200-102899800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr9:102891800-102935200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr9:102892200-102900600	Weak transcription	Fetal Muscle Leg	muscle
31	chr9:102892200-102909200	Weak transcription	Fetal Stomach	stomach
32	chr9:102893000-102934600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr9:102893800-102936200	Weak transcription	Primary B cells from cord blood	blood
34	chr9:102894200-102901600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr9:102895000-102900400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:102895200-102920600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr9:102895600-102900000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:102895600-102903800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr9:102895800-102902200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:102896400-102902000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr9:102896400-102902400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:102896800-102900400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:102897000-102901800	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr9:102897400-102900000	Weak transcription	Fetal Lung	lung
45	chr9:102898400-102899800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr9:102898400-102901800	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr9:102898800-102902000	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr9:102899000-102899800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr9:102899200-102901800	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr9:102899600-102899800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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