Variant report

Variant	rs1886763
Chromosome Location	chr10:23482363-23482364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10764393	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12415184	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1408986	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1408987	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7904665	0.82[AMR][1000 genomes]
rs7904764	0.82[AMR][1000 genomes]
rs986151	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825301	chr10:23440604-23505846	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825302	chr10:23457022-23497329	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2754706	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2756096	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv430137	chr10:23477062-23509344	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3408507	chr10:23479971-23482819	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	esv3322961	chr10:23480571-23483119	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
9	esv3374760	chr10:23480971-23483819	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23479200-23483400	Active TSS	Pancreas	Pancrea
2	chr10:23479800-23482600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr10:23480200-23482400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr10:23480200-23482600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
5	chr10:23480200-23484400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr10:23480400-23482400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
7	chr10:23480400-23482400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr10:23480400-23482600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:23480800-23482800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr10:23481000-23482400	Enhancers	Liver	Liver
11	chr10:23481200-23482600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
12	chr10:23481400-23482600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:23481600-23482400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:23481600-23482400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:23481600-23482600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:23481600-23482600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr10:23481800-23482400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:23481800-23482400	Active TSS	Right Atrium	heart
19	chr10:23481800-23482400	Bivalent Enhancer	HMEC	breast
20	chr10:23482000-23482400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:23482000-23482400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
22	chr10:23482000-23482400	Bivalent/Poised TSS	NHEK	skin
23	chr10:23482000-23482800	Bivalent Enhancer	Fetal Brain Male	brain
24	chr10:23482200-23482400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
25	chr10:23482200-23482400	Bivalent Enhancer	Fetal Intestine Small	intestine
26	chr10:23482200-23482400	Bivalent Enhancer	Fetal Lung	lung
27	chr10:23482200-23482400	Bivalent/Poised TSS	Right Ventricle	heart
28	chr10:23482200-23482600	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:23482200-23482600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
30	chr10:23482200-23482600	Bivalent Enhancer	Fetal Stomach	stomach
31	chr10:23482200-23482800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:23482200-23482800	Bivalent Enhancer	Brain Germinal Matrix	brain
33	chr10:23482200-23484000	Weak transcription	Gastric	stomach

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