Variant report

Variant	rs188690081
Chromosome Location	chrX:153831306-153831307
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:153824667..153827046-chrX:153830965..153832603,2	MCF-7	breast:
2	chrX:153774436..153776953-chrX:153831289..153833251,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160211	Chromatin interaction
ENSG00000073009	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532962	chrX:153564946-153870337	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
2	nsv532964	chrX:153622940-153854307	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
3	nsv995104	chrX:153731421-153832724	Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	esv3648994	chrX:153829693-153919915	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv518228	chrX:153829693-153919915	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:153825400-153832000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chrX:153828000-153833000	Enhancers	HSMMtube	muscle
3	chrX:153828200-153831800	Weak transcription	Primary hematopoietic stem cells	blood
4	chrX:153828400-153835000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chrX:153828600-153833400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chrX:153828800-153831600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chrX:153828800-153833200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chrX:153829000-153831800	Weak transcription	A549	lung
9	chrX:153829000-153832000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chrX:153829200-153831600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chrX:153829400-153833000	Enhancers	HSMM	muscle
12	chrX:153829600-153831600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chrX:153829600-153831800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chrX:153829600-153832000	Weak transcription	NH-A	brain
15	chrX:153829800-153831800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chrX:153829800-153832000	Weak transcription	Osteobl	bone
17	chrX:153829800-153836000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chrX:153830200-153831800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chrX:153830200-153832000	Weak transcription	NHDF-Ad	bronchial
20	chrX:153830200-153833200	Enhancers	Hela-S3	cervix
21	chrX:153830600-153831800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chrX:153831000-153831400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chrX:153831000-153833000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chrX:153831000-153833200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chrX:153831200-153833200	Enhancers	HMEC	breast

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