Variant report

Variant	rs1886947
Chromosome Location	chr10:4075629-4075630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4068902..4073609-chr10:4074396..4078715,6	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1886945	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2013181	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2645213	0.87[AFR][1000 genomes]
rs2765652	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2765655	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2765661	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4066400-4081200	Weak transcription	Gastric	stomach
2	chr10:4067400-4077000	Weak transcription	Right Atrium	heart
3	chr10:4070400-4077200	Weak transcription	Esophagus	oesophagus
4	chr10:4071200-4076800	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:4071200-4077000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:4072200-4075800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:4072200-4077000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:4074600-4075800	Enhancers	GM12878-XiMat	blood
9	chr10:4075200-4076000	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr10:4075200-4076800	Weak transcription	Placenta	Placenta
11	chr10:4075200-4077000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr10:4075400-4076000	Weak transcription	NHDF-Ad	bronchial
13	chr10:4075400-4076200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:4075400-4076800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:4075400-4077000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:4075400-4077000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:4075400-4077200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:4075600-4076000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr10:4075600-4077000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr10:4075600-4077200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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