Variant report

Variant	rs188767700
Chromosome Location	chr7:39663743-39663744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:186285270..186285782-chr7:39663616..39664262,2	Hela-S3	cervix:
2	chr5:102455392..102456302-chr7:39663362..39664060,2	Hela-S3	cervix:
3	chr7:39649814..39652615-chr7:39661583..39664092,3	MCF-7	breast:
4	chr6:35656516..35657052-chr7:39663216..39663813,2	Hela-S3	cervix:
5	chr7:39604710..39608797-chr7:39663149..39665225,4	K562	blood:
6	chr7:39661595..39664442-chr7:39724184..39727170,2	MCF-7	breast:
7	chr7:39663090..39665724-chr7:39988469..39990285,2	MCF-7	breast:
8	chr7:39603623..39606050-chr7:39662280..39665105,2	MCF-7	breast:
9	chr7:39660619..39666370-chr7:39771379..39777121,13	MCF-7	breast:
10	chr7:39661063..39664836-chr7:39769831..39775766,6	MCF-7	breast:
11	chr7:39605969..39608430-chr7:39663149..39665540,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000006451	Chromatin interaction
ENSG00000145723	Chromatin interaction
ENSG00000231951	Chromatin interaction
ENSG00000241127	Chromatin interaction
ENSG00000096060	Chromatin interaction
ENSG00000145725	Chromatin interaction
ENSG00000259826	Chromatin interaction
ENSG00000065883	Chromatin interaction
ENSG00000227172	Chromatin interaction
ENSG00000188185	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887970	chr7:39587912-39688152	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv508451	chr7:39660784-39787222	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv887971	chr7:39662268-39745775	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39661600-39664600	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr7:39661800-39664400	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr7:39661800-39664600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr7:39662000-39664200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:39662000-39664200	Active TSS	A549	lung
6	chr7:39662000-39664400	Active TSS	H9 Cell Line	embryonic stem cell
7	chr7:39662000-39664400	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr7:39662000-39664600	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr7:39662000-39665200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:39662200-39664200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:39662200-39664200	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr7:39662200-39664200	Active TSS	Placenta Amnion	Placenta Amnion
13	chr7:39662200-39664200	Active TSS	Psoas Muscle	Psoas
14	chr7:39662200-39664200	Active TSS	NHEK	skin
15	chr7:39662200-39664400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:39662200-39664400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:39662200-39664400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr7:39662200-39664600	Active TSS	H1 Cell Line	embryonic stem cell
19	chr7:39662200-39664800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr7:39662200-39664800	Active TSS	HMEC	breast
21	chr7:39662400-39663800	Active TSS	Brain Hippocampus Middle	brain
22	chr7:39662400-39664000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:39662400-39664000	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr7:39662400-39664000	Active TSS	Brain Anterior Caudate	brain
25	chr7:39662400-39664000	Active TSS	Brain Cingulate Gyrus	brain
26	chr7:39662400-39664000	Active TSS	Fetal Brain Male	brain
27	chr7:39662400-39664000	Active TSS	Fetal Lung	lung
28	chr7:39662400-39664000	Active TSS	Pancreas	Pancrea
29	chr7:39662400-39664000	Active TSS	Small Intestine	intestine
30	chr7:39662400-39664200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:39662400-39664200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr7:39662400-39664200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:39662400-39664200	Active TSS	Fetal Intestine Large	intestine
34	chr7:39662400-39664400	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr7:39662400-39664400	Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr7:39662400-39664400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr7:39662400-39664400	Active TSS	Aorta	Aorta
38	chr7:39662400-39664400	Active TSS	Colonic Mucosa	Colon
39	chr7:39662400-39664400	Active TSS	Gastric	stomach
40	chr7:39662400-39664400	Active TSS	Lung	lung
41	chr7:39662400-39664400	Active TSS	Ovary	ovary
42	chr7:39662400-39664400	Active TSS	GM12878-XiMat	blood
43	chr7:39662400-39664600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr7:39662400-39664600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr7:39662400-39664800	Active TSS	Esophagus	oesophagus
46	chr7:39662400-39664800	Active TSS	Left Ventricle	heart
47	chr7:39662400-39665000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:39662400-39665200	Active TSS	NHDF-Ad	bronchial
49	chr7:39662400-39665400	Active TSS	NHLF	lung
50	chr7:39662600-39663800	Active TSS	Cortex derived primary cultured neurospheres	brain

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