Variant report

Variant	rs1887903
Chromosome Location	chr9:92841388-92841389
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10118926	0.83[AMR][1000 genomes]
rs1036701	0.81[CEU][hapmap]
rs1443361	0.83[AMR][1000 genomes]
rs1443362	0.83[AMR][1000 genomes]
rs1571447	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2028630	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4142061	0.83[AMR][1000 genomes]
rs4743827	0.87[CEU][hapmap];0.94[MKK][hapmap];0.83[AMR][1000 genomes]
rs894636	0.83[AMR][1000 genomes]
rs920754	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs993171	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv893562	chr9:92794721-92850878	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92839200-92855200	Weak transcription	Pancreas	Pancrea
2	chr9:92839600-92842000	Enhancers	Primary B cells from peripheral blood	blood
3	chr9:92840200-92841600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr9:92840400-92848000	Weak transcription	Fetal Brain Male	brain
5	chr9:92840800-92841400	Enhancers	Primary hematopoietic stem cells	blood
6	chr9:92841000-92841600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:92841200-92841600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
8	chr9:92841200-92841600	Bivalent Enhancer	Primary B cells from cord blood	blood
9	chr9:92841200-92841600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:92841200-92842000	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links