Variant report

Variant	rs188834490
Chromosome Location	chr11:104572270-104572271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv832254	chr11:104412769-104607277	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2761706	chr11:104523335-104634024	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2511744	chr11:104571905-104573625	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104566200-104575000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:104566400-104575000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:104570000-104572800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr11:104570000-104572800	Enhancers	Dnd41	blood
5	chr11:104570800-104572800	Enhancers	Primary T cells from cord blood	blood
6	chr11:104570800-104572800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:104571000-104572400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr11:104571000-104572400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr11:104571200-104572600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr11:104571800-104576200	Weak transcription	Fetal Lung	lung
11	chr11:104572000-104573400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:104572000-104574000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:104572000-104575200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:104572000-104575400	Weak transcription	Adipose Nuclei	Adipose
15	chr11:104572000-104575400	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:104572000-104575600	Weak transcription	Small Intestine	intestine
17	chr11:104572000-104576200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:104572000-104576400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:104572000-104576600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:104572000-104576800	Weak transcription	NHLF	lung
21	chr11:104572200-104572600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:104572200-104574200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:104572200-104574200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:104572200-104575000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:104572200-104575200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr11:104572200-104575200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:104572200-104575400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr11:104572200-104576400	Weak transcription	NH-A	brain

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