Variant report

Variant	rs1888692
Chromosome Location	chr10:18453209-18453210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12262147	1.00[ASN][1000 genomes]
rs16916873	1.00[ASN][1000 genomes]
rs17605291	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17605326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56276305	0.87[AMR][1000 genomes]
rs7902373	1.00[ASN][1000 genomes]
rs7916200	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522505	chr10:18453209-18465479	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18431400-18468800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:18435000-18454200	Weak transcription	Brain Anterior Caudate	brain
3	chr10:18435000-18467200	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:18443800-18459000	Weak transcription	Fetal Intestine Small	intestine
5	chr10:18444600-18456000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:18444600-18457000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:18444600-18458400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:18444600-18466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:18448200-18453400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:18448400-18454000	Weak transcription	Left Ventricle	heart
11	chr10:18448400-18454200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:18448400-18469000	Weak transcription	Right Ventricle	heart
13	chr10:18448600-18454200	Weak transcription	Aorta	Aorta
14	chr10:18448800-18453800	Weak transcription	Fetal Brain Female	brain
15	chr10:18449000-18453600	Weak transcription	Fetal Brain Male	brain
16	chr10:18450000-18453400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr10:18452400-18453600	Enhancers	Rectal Smooth Muscle	rectum
18	chr10:18452400-18454600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:18452400-18454600	Enhancers	Ovary	ovary
20	chr10:18452400-18456000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr10:18452600-18453800	Enhancers	Fetal Heart	heart
22	chr10:18452600-18454000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:18452600-18454000	Enhancers	NHLF	lung
24	chr10:18452600-18454600	Enhancers	Fetal Lung	lung
25	chr10:18452600-18454600	Enhancers	Fetal Stomach	stomach
26	chr10:18452800-18453800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:18452800-18454600	Enhancers	Osteobl	bone
28	chr10:18452800-18466600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:18453000-18453800	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr10:18453000-18454000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr10:18453000-18454200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:18453000-18454200	Weak transcription	Pancreas	Pancrea
33	chr10:18453000-18459600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr10:18453200-18453400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:18453200-18453400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr10:18453200-18453400	Enhancers	HSMM	muscle
37	chr10:18453200-18453600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:18453200-18453600	Flanking Active TSS	NH-A	brain
39	chr10:18453200-18453800	Flanking Active TSS	NHDF-Ad	bronchial
40	chr10:18453200-18454200	Weak transcription	Colon Smooth Muscle	Colon
41	chr10:18453200-18454600	Enhancers	Muscle Satellite Cultured Cells	--
42	chr10:18453200-18454600	Enhancers	Fetal Muscle Leg	muscle

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