Variant report

Variant	rs188875133
Chromosome Location	chr4:143190165-143190166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830098	chr4:143050143-143234384	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv595604	chr4:143077401-143228914	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830099	chr4:143138257-143285055	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3430259	chr4:143190146-143190360	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143174600-143190200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:143179800-143191000	Weak transcription	Colonic Mucosa	Colon
3	chr4:143181400-143191400	Weak transcription	Left Ventricle	heart
4	chr4:143181600-143195600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:143183000-143204800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:143185400-143192400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:143185400-143199000	Weak transcription	Psoas Muscle	Psoas
8	chr4:143186400-143191200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:143186600-143191200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:143186600-143199800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr4:143187400-143190200	Weak transcription	Primary T cells from cord blood	blood
12	chr4:143187400-143190400	Weak transcription	HSMM	muscle
13	chr4:143187400-143190600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:143187400-143190800	Weak transcription	HUVEC	blood vessel
15	chr4:143187400-143191200	Weak transcription	Dnd41	blood
16	chr4:143187400-143193000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr4:143187400-143193600	Weak transcription	Small Intestine	intestine
18	chr4:143187400-143197200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:143187400-143199400	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:143187400-143199400	Weak transcription	NH-A	brain
21	chr4:143187400-143200400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:143187400-143203800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr4:143187400-143218600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:143187600-143190200	Weak transcription	HMEC	breast
25	chr4:143187600-143192600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr4:143187600-143194600	Weak transcription	NHLF	lung
27	chr4:143187600-143196000	Weak transcription	A549	lung
28	chr4:143187600-143200600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr4:143187800-143194000	Weak transcription	NHEK	skin
30	chr4:143188000-143190200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr4:143188600-143190200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr4:143188800-143191200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr4:143188800-143191400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr4:143188800-143194000	Weak transcription	NHDF-Ad	bronchial
35	chr4:143189000-143193000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:143189200-143190600	Weak transcription	Fetal Heart	heart
37	chr4:143189600-143190200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr4:143189600-143191200	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr4:143189600-143192200	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr4:143189600-143192200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr4:143189600-143192800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
42	chr4:143189800-143191800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr4:143189800-143191800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr4:143190000-143190200	Genic enhancers	HSMMtube	muscle
45	chr4:143190000-143191200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr4:143190000-143191400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr4:143190000-143191800	Enhancers	H1 Cell Line	embryonic stem cell
48	chr4:143190000-143191800	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr4:143190000-143192000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr4:143190000-143192000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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