Variant report

Variant	rs188896349
Chromosome Location	chr15:73661179-73661180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73659851..73663146-chr15:73925069..73927598,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NPTN-2	chr15:73660613-73661255	NONHSAT047146

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3388771	chr15:73659224-73662947	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	esv3403418	chr15:73659924-73662772	Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv12124	chr15:73659979-73661419	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv1792905	chr15:73660092-73661188	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv1805225	chr15:73660092-73661188	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv1816722	chr15:73660092-73661188	Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	esv1822473	chr15:73660092-73661188	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
12	esv1834664	chr15:73660092-73661188	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
13	esv1834831	chr15:73660092-73661188	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
14	esv1838490	chr15:73660092-73661188	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
15	esv1848961	chr15:73660092-73661188	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
16	esv1849101	chr15:73660092-73661188	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
17	esv1799382	chr15:73660092-73661239	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
18	esv1813218	chr15:73660092-73661239	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
19	esv1815754	chr15:73660092-73661239	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
20	esv1839432	chr15:73660092-73661239	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
21	esv1843847	chr15:73660092-73661239	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
22	nsv569953	chr15:73660092-73661239	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
23	esv1829669	chr15:73660092-73664741	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
24	esv1834801	chr15:73660092-73664741	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
25	esv1836096	chr15:73660092-73664741	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
26	nsv569954	chr15:73660092-73664741	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
27	esv1792198	chr15:73660092-73669017	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
28	esv1847480	chr15:73660092-73669461	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
29	esv1842293	chr15:73660092-73669680	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
30	esv1823194	chr15:73660092-73680301	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
31	esv1802713	chr15:73660218-73661239	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
32	nsv569956	chr15:73660218-73661239	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
33	nsv569958	chr15:73660269-73661188	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
34	nsv569959	chr15:73660269-73661239	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
35	esv1808787	chr15:73660269-73664741	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
36	esv1837204	chr15:73660269-73669177	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
37	esv1847077	chr15:73660269-73669680	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
38	nsv569962	chr15:73660339-73661239	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
39	nsv569964	chr15:73660390-73661239	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
40	nsv569966	chr15:73660564-73661239	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
41	nsv569967	chr15:73660615-73661239	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
42	nsv569968	chr15:73660615-73664741	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
43	nsv569969	chr15:73660615-73668907	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73658600-73661800	Active TSS	Right Atrium	heart
2	chr15:73659200-73661400	Active TSS	Left Ventricle	heart
3	chr15:73659200-73661600	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr15:73659200-73661800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
5	chr15:73659200-73662000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:73659400-73661200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
7	chr15:73659400-73661400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr15:73659400-73661800	Bivalent Enhancer	Spleen	Spleen
9	chr15:73659400-73662000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:73659400-73662000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr15:73659400-73662200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr15:73659400-73662200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
13	chr15:73659600-73661400	Flanking Active TSS	Pancreas	Pancrea
14	chr15:73659600-73661800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:73659600-73662200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr15:73659600-73662200	Bivalent/Poised TSS	Fetal Brain Female	brain
17	chr15:73659800-73661200	Enhancers	Liver	Liver
18	chr15:73659800-73661400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:73659800-73661600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:73659800-73661800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr15:73659800-73662000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr15:73660000-73661200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
23	chr15:73660000-73661200	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr15:73660000-73661400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:73660000-73661400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:73660000-73661400	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr15:73660000-73661400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
28	chr15:73660000-73661400	Weak transcription	Fetal Heart	heart
29	chr15:73660000-73661800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr15:73660000-73661800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:73660000-73661800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
32	chr15:73660000-73662200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
33	chr15:73660000-73662200	Active TSS	H9 Cell Line	embryonic stem cell
34	chr15:73660200-73661200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:73660200-73661200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:73660200-73661200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:73660200-73661200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
38	chr15:73660200-73661200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
39	chr15:73660200-73661200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
40	chr15:73660200-73661200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
41	chr15:73660200-73661200	Flanking Bivalent TSS/Enh	HMEC	breast
42	chr15:73660200-73661400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:73660200-73661400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:73660200-73661400	Active TSS	Aorta	Aorta
45	chr15:73660200-73661400	Bivalent/Poised TSS	HepG2	liver
46	chr15:73660200-73661600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
47	chr15:73660200-73661600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:73660200-73661600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:73660400-73661200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
50	chr15:73660400-73661200	Active TSS	Gastric	stomach

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