Variant report

Variant	rs188905219
Chromosome Location	chr19:45074105-45074106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:30)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:30 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:45073960-45074110	GM12870	blood:	n/a	n/a
2	ELF1	chr19:45073932-45074425	A549	lung:	n/a	n/a
3	RAD21	chr19:45074027-45074591	HCT-116	colon:	n/a	n/a
4	TEAD4	chr19:45074017-45074493	K562	blood:	n/a	n/a
5	RAD21	chr19:45073998-45074635	A549	lung:	n/a	n/a
6	RAD21	chr19:45074035-45074576	MCF-7	breast:	n/a	n/a
7	CTCF	chr19:45074060-45074582	HCT-116	colon:	n/a	n/a
8	RAD21	chr19:45074054-45074543	SK-N-SH_RA	brain:	n/a	n/a
9	CTCF	chr19:45073959-45074610	SK-N-SH	brain:	n/a	n/a
10	RAD21	chr19:45074041-45074598	MCF-7	breast:	n/a	n/a
11	RAD21	chr19:45074008-45074629	ECC-1	luminal epithelium:	n/a	n/a
12	RAD21	chr19:45073977-45074629	HCT-116	colon:	n/a	n/a
13	RAD21	chr19:45074075-45075025	HepG2	liver:	n/a	n/a
14	CTCF	chr19:45074027-45074574	HCT-116	colon:	n/a	n/a
15	CTCF	chr19:45074000-45074150	HMEC	breast:	n/a	n/a
16	CTCF	chr19:45074083-45074534	HepG2	liver:	n/a	n/a
17	RAD21	chr19:45074047-45074600	ECC-1	luminal epithelium:	n/a	n/a
18	RAD21	chr19:45074009-45074590	IMR90	lung:	n/a	n/a
19	UBTF	chr19:45074019-45074291	K562	blood:	n/a	n/a
20	CTCF	chr19:45074020-45074170	A549	lung:	n/a	n/a
21	RAD21	chr19:45073892-45074622	SK-N-SH	brain:	n/a	n/a
22	CTCF	chr19:45074078-45074526	K562	blood:	n/a	n/a
23	CTCF	chr19:45074016-45074574	A549	lung:	n/a	n/a
24	CTCF	chr19:45074105-45074494	IMR90	lung:	n/a	n/a
25	RCOR1	chr19:45073884-45074342	K562	blood:	n/a	n/a
26	CTCF	chr19:45073694-45075713	A549	lung:	n/a	chr19:45075149-45075162
27	RAD21	chr19:45074095-45074493	SK-N-SH_RA	brain:	n/a	n/a
28	RAD21	chr19:45073917-45074637	A549	lung:	n/a	n/a
29	RAD21	chr19:45074092-45074499	Hela-S3	cervix:	n/a	n/a
30	RCOR1	chr19:45073964-45074143	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:45016284..45016826-chr19:45073849..45074372,2	MCF-7	breast:
2	chr19:45073833..45074821-chr19:45348052..45348614,3	K562	blood:
3	chr19:45074025..45075864-chr19:45246101..45248322,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000224366	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062812	chr19:45042262-45214796	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv960931	chr19:45073821-45102725	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45070000-45074400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr19:45070400-45080400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr19:45070600-45075200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr19:45073600-45074200	Enhancers	HepG2	liver
5	chr19:45073800-45076400	Enhancers	K562	blood

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