Variant report

Variant	rs1889362
Chromosome Location	chr14:20797746-20797747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:20794190-20797847	K562	blood:	n/a	n/a
2	POLR2A	chr14:20797597-20797791	MCF-7	breast:	n/a	n/a
3	CHD1	chr14:20797739-20797804	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr14:20795120-20798793	H1-hESC	embryonic stem cell:	n/a	n/a
5	CEBPB	chr14:20797699-20798199	HepG2	liver:	n/a	chr14:20798035-20798046
6	POLR2A	chr14:20793024-20797819	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:20796122..20797747-chr14:20936020..20938269,2	MCF-7	breast:
2	chr14:20795965..20797792-chr14:20923405..20926265,2	MCF-7	breast:
3	chr14:20795171..20799091-chr14:20799468..20802404,5	MCF-7	breast:

Variant related genes	Relation type
CCNB1IP1	TF binding region
SNORD126	TF binding region
ENSG00000100814	Chromatin interaction
ENSG00000100823	Chromatin interaction
ENSG00000198805	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10873395	0.81[ASN][1000 genomes]
rs11622655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12891805	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2297616	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3093882	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3093890	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3093897	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3093902	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3093904	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3093933	0.84[EUR][1000 genomes]
rs4981150	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981957	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981983	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4981998	0.87[EUR][1000 genomes]
rs57101853	0.87[EUR][1000 genomes]
rs58530849	0.87[EUR][1000 genomes]
rs6575124	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6575135	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152084	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7155699	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8009242	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8014147	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8022565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022671	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs878157	0.80[EUR][1000 genomes]
rs884368	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323870	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	nsv1037160	chr14:20517485-20901811	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
4	nsv541974	chr14:20517485-20901811	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
5	esv1806993	chr14:20743269-20841162	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
6	nsv534131	chr14:20757405-20886235	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1042025	chr14:20787961-20817851	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:20774200-20800400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr14:20774200-20800400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:20774200-20800400	Weak transcription	Fetal Brain Male	brain
4	chr14:20774200-20800400	Weak transcription	Stomach Mucosa	stomach
5	chr14:20774200-20800600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr14:20774200-20800800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr14:20774200-20800800	Weak transcription	Small Intestine	intestine
8	chr14:20778800-20798600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:20779400-20797800	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr14:20779400-20798000	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr14:20779400-20799000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:20779600-20798200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:20781800-20798600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:20782600-20800800	Weak transcription	Esophagus	oesophagus
15	chr14:20784800-20799200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:20785800-20800400	Weak transcription	Brain Hippocampus Middle	brain
17	chr14:20786200-20799000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:20786200-20800600	Weak transcription	Aorta	Aorta
19	chr14:20786200-20800600	Weak transcription	Colonic Mucosa	Colon
20	chr14:20786400-20800800	Weak transcription	Pancreas	Pancrea
21	chr14:20787400-20798800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:20787400-20800800	Weak transcription	Gastric	stomach
23	chr14:20787600-20800400	Weak transcription	Brain Germinal Matrix	brain
24	chr14:20790000-20800800	Weak transcription	Spleen	Spleen
25	chr14:20790600-20800800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:20793000-20800600	Weak transcription	Primary T cells from cord blood	blood
27	chr14:20793200-20799200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr14:20793200-20799600	Weak transcription	Brain Anterior Caudate	brain
29	chr14:20793200-20800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr14:20793200-20800600	Weak transcription	Thymus	Thymus
31	chr14:20793200-20800800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr14:20793400-20800400	Weak transcription	Fetal Intestine Small	intestine
33	chr14:20793400-20800400	Weak transcription	Fetal Stomach	stomach
34	chr14:20793800-20800400	Weak transcription	Psoas Muscle	Psoas
35	chr14:20793800-20800600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr14:20793800-20800600	Weak transcription	Fetal Muscle Leg	muscle
37	chr14:20793800-20800600	Weak transcription	Lung	lung
38	chr14:20793800-20800600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr14:20793800-20800800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr14:20794800-20797800	Genic enhancers	HepG2	liver
41	chr14:20794800-20798200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr14:20794800-20800400	Weak transcription	Primary hematopoietic stem cells	blood
43	chr14:20794800-20800400	Weak transcription	Brain Substantia Nigra	brain
44	chr14:20794800-20800400	Weak transcription	Fetal Brain Female	brain
45	chr14:20794800-20800400	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr14:20794800-20800600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr14:20794800-20800600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr14:20794800-20800600	Weak transcription	Placenta	Placenta
49	chr14:20795000-20798200	Genic enhancers	Dnd41	blood
50	chr14:20795000-20798600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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