Variant report

Variant	rs188947990
Chromosome Location	chr2:153579084-153579085
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:153574994..153576922-chr2:153576951..153581012,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177917	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834421	chr2:153470109-153664235	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3693438	chr2:153505376-153718246	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1798142	chr2:153578113-153600123	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv875293	chr2:153578900-153617420	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153575800-153582800	Weak transcription	Lung	lung
2	chr2:153575800-153587200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:153575800-153611600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:153575800-153611600	Weak transcription	Esophagus	oesophagus
5	chr2:153575800-153621400	Weak transcription	Pancreas	Pancrea
6	chr2:153576000-153579200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr2:153576000-153581200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr2:153576000-153594400	Weak transcription	Left Ventricle	heart
9	chr2:153576000-153615800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr2:153576200-153594800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr2:153576600-153587000	Weak transcription	Placenta	Placenta
12	chr2:153576800-153581200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr2:153576800-153581800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:153576800-153585200	Weak transcription	Fetal Stomach	stomach
15	chr2:153576800-153587200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr2:153576800-153591400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:153576800-153592600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:153576800-153592800	Weak transcription	NH-A	brain
19	chr2:153577000-153579200	Weak transcription	Right Ventricle	heart
20	chr2:153577000-153579400	Weak transcription	HMEC	breast
21	chr2:153577000-153582800	Weak transcription	Psoas Muscle	Psoas
22	chr2:153577000-153586400	Weak transcription	NHEK	skin
23	chr2:153577000-153587200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:153577000-153592600	Weak transcription	Fetal Intestine Large	intestine
25	chr2:153577000-153592800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr2:153577000-153593000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr2:153577000-153593000	Weak transcription	Osteobl	bone
28	chr2:153577000-153594400	Weak transcription	Aorta	Aorta
29	chr2:153577000-153594600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr2:153577000-153595000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr2:153577200-153579600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr2:153577200-153579800	Weak transcription	NHDF-Ad	bronchial
33	chr2:153577200-153580200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr2:153577200-153583600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:153577200-153584600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr2:153577200-153584800	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr2:153577200-153586200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr2:153577200-153586400	Weak transcription	Primary T cells from cord blood	blood
39	chr2:153577200-153587000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr2:153577200-153592800	Weak transcription	Brain Anterior Caudate	brain
41	chr2:153577200-153593000	Weak transcription	Fetal Kidney	kidney
42	chr2:153577200-153593000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr2:153577200-153593400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr2:153577200-153594200	Weak transcription	Brain Hippocampus Middle	brain
45	chr2:153577200-153594600	Weak transcription	Spleen	Spleen
46	chr2:153577200-153617600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr2:153577400-153581200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr2:153577400-153586200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr2:153577400-153586400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr2:153577400-153587200	Weak transcription	Thymus	Thymus

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