Variant report

Variant rs188977530
Chromosome Location chr3:79023447-79023448
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:79001000-79024200 Weak transcription Colon Smooth Muscle Colon
2 chr3:79006800-79023600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr3:79011400-79027400 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr3:79016800-79023600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr3:79016800-79024800 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr3:79018000-79027600 Weak transcription Brain Cingulate Gyrus brain
7 chr3:79018200-79027600 Weak transcription Brain Angular Gyrus brain
8 chr3:79018600-79024400 Weak transcription Fetal Lung lung
9 chr3:79018600-79027600 Weak transcription Brain Hippocampus Middle brain
10 chr3:79018600-79027600 Weak transcription Brain Substantia Nigra brain
11 chr3:79019000-79023600 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr3:79019200-79025400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr3:79019600-79025400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr3:79019600-79027400 Weak transcription Brain Anterior Caudate brain
15 chr3:79020600-79027800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr3:79022000-79023800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr3:79022200-79026200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr3:79022200-79027600 Weak transcription Psoas Muscle Psoas
19 chr3:79022400-79024400 Weak transcription HepG2 liver
20 chr3:79022400-79041600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr3:79022800-79024000 Flanking Active TSS Muscle Satellite Cultured Cells --
22 chr3:79023000-79023600 Active TSS HSMM muscle
23 chr3:79023000-79023800 Active TSS HSMMtube muscle
24 chr3:79023000-79023800 Active TSS NHDF-Ad bronchial
25 chr3:79023000-79023800 Flanking Active TSS Osteobl bone
26 chr3:79023000-79024000 Enhancers NH-A brain
27 chr3:79023200-79023600 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr3:79023200-79023600 Flanking Active TSS A549 lung
29 chr3:79023200-79023800 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr3:79023200-79023800 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr3:79023200-79023800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr3:79023200-79023800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr3:79023200-79023800 Active TSS Fetal Muscle Leg muscle
34 chr3:79023200-79023800 Flanking Active TSS NHEK skin
35 chr3:79023400-79023600 Active TSS Adipose Nuclei Adipose
36 chr3:79023400-79023800 Flanking Active TSS HUVEC blood vessel
37 chr3:79023400-79023800 Active TSS NHLF lung
38 chr3:79023400-79026400 Enhancers HUES48 Cell Line embryonic stem cell
39 chr3:79023400-79031800 Enhancers HUES64 Cell Line embryonic stem cell

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