Variant report

Variant	rs1890303
Chromosome Location	chr1:210514153-210514154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210512806..210515605-chr1:210546064..210549324,3	MCF-7	breast:
2	chr1:210513019..210515832-chr1:210545319..210548236,4	K562	blood:
3	chr1:210510081..210515832-chr1:210544850..210548843,7	K562	blood:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2143589	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3765879	0.83[JPT][hapmap]
rs6540589	0.82[CHD][hapmap]
rs6669428	0.82[CHD][hapmap]
rs6697682	0.95[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8769	chr1:210403509-210564588	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210503200-210516800	Weak transcription	Lung	lung
2	chr1:210503600-210546800	Weak transcription	Fetal Intestine Small	intestine
3	chr1:210504400-210514800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:210504400-210516400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:210506600-210515600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:210513000-210516400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:210513000-210516600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:210513000-210540400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:210513200-210514800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:210513200-210516000	Enhancers	Primary hematopoietic stem cells	blood
11	chr1:210513200-210516600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:210513200-210517800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr1:210513400-210516800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:210513600-210514200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr1:210513600-210514400	Flanking Active TSS	GM12878-XiMat	blood
16	chr1:210513600-210515400	Enhancers	Primary T cells from cord blood	blood
17	chr1:210513600-210516400	Enhancers	Dnd41	blood
18	chr1:210513600-210516600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:210513600-210517600	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr1:210513600-210517800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr1:210513600-210517800	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr1:210513800-210514400	Enhancers	Primary B cells from cord blood	blood
23	chr1:210513800-210516600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr1:210513800-210516600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr1:210514000-210514200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:210514000-210514600	Enhancers	Fetal Heart	heart
27	chr1:210514000-210515200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr1:210514000-210515800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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