Variant report

Variant	rs1890383
Chromosome Location	chr9:96708343-96708344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96702755..96704625-chr9:96706063..96708552,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10739968	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1756962	0.82[ASN][1000 genomes]
rs1819445	0.98[ASN][1000 genomes]
rs1933671	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2150624	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv824993	chr9:96699362-96725105	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96706800-96708600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr9:96707200-96708600	Flanking Active TSS	Stomach Smooth Muscle	stomach
3	chr9:96707400-96708600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr9:96707400-96708800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:96707600-96708400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
6	chr9:96707600-96708600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr9:96707600-96708600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
8	chr9:96707600-96708600	Bivalent Enhancer	Fetal Intestine Small	intestine
9	chr9:96707600-96708600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
10	chr9:96707600-96708800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr9:96707600-96708800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:96707800-96708400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
13	chr9:96707800-96708400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:96707800-96708400	Bivalent Enhancer	Fetal Brain Male	brain
15	chr9:96707800-96708400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
16	chr9:96707800-96708400	Bivalent Enhancer	Fetal Lung	lung
17	chr9:96707800-96708400	Flanking Bivalent TSS/Enh	Placenta	Placenta
18	chr9:96707800-96708400	Active TSS	Gastric	stomach
19	chr9:96707800-96708400	Bivalent/Poised TSS	Osteobl	bone
20	chr9:96707800-96708600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
21	chr9:96707800-96708600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr9:96707800-96708600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:96707800-96708600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr9:96707800-96708600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:96707800-96708600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:96707800-96708600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:96707800-96708600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
28	chr9:96707800-96708600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
29	chr9:96707800-96708800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
30	chr9:96707800-96708800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
31	chr9:96707800-96708800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
32	chr9:96707800-96708800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
33	chr9:96707800-96708800	Bivalent Enhancer	Liver	Liver
34	chr9:96707800-96708800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
35	chr9:96707800-96708800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
36	chr9:96707800-96708800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
37	chr9:96707800-96708800	Bivalent/Poised TSS	A549	lung
38	chr9:96707800-96709000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
39	chr9:96707800-96709000	Active TSS	Right Atrium	heart
40	chr9:96708000-96708400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr9:96708000-96708400	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
42	chr9:96708000-96708400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
43	chr9:96708000-96708400	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr9:96708000-96708400	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:96708000-96708400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:96708000-96708400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
47	chr9:96708000-96708400	Flanking Active TSS	Pancreas	Pancrea
48	chr9:96708000-96708400	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
49	chr9:96708000-96708400	Bivalent/Poised TSS	Stomach Mucosa	stomach
50	chr9:96708000-96708400	Flanking Bivalent TSS/Enh	HMEC	breast

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