Variant report

Variant	rs189053336
Chromosome Location	chr11:8224003-8224004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8216194..8218883-chr11:8223154..8225386,2	K562	blood:
2	chr11:8223360..8225653-chr11:8985762..8987357,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LMO1-2	chr11:8223002-8230737	NONHSAT017846

Variant related genes	Relation type
ENSG00000175348	Chromatin interaction
ENSG00000254860	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896981	chr11:8152080-8227964	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3343016	chr11:8221776-8224074	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1040979	chr11:8223090-8272605	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8222600-8227400	Enhancers	Primary B cells from cord blood	blood
2	chr11:8222600-8227400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:8222600-8228000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:8223000-8224600	Enhancers	Primary hematopoietic stem cells	blood
5	chr11:8223000-8224600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:8223000-8225200	Enhancers	Adipose Nuclei	Adipose
7	chr11:8223000-8225400	Enhancers	Fetal Lung	lung
8	chr11:8223000-8227200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:8223000-8227200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:8223000-8227400	Enhancers	Brain Germinal Matrix	brain
11	chr11:8223000-8228000	Enhancers	Primary B cells from peripheral blood	blood
12	chr11:8223000-8228800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:8223200-8224200	Enhancers	Brain Anterior Caudate	brain
14	chr11:8223200-8224600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:8223200-8224600	Enhancers	Fetal Muscle Leg	muscle
16	chr11:8223200-8225000	Enhancers	Fetal Brain Male	brain
17	chr11:8223200-8225200	Enhancers	Fetal Brain Female	brain
18	chr11:8223200-8225200	Enhancers	Spleen	Spleen
19	chr11:8223200-8225800	Enhancers	Brain Hippocampus Middle	brain
20	chr11:8223400-8224800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr11:8223400-8225800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:8223400-8227400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:8223600-8227000	Weak transcription	Fetal Thymus	thymus
24	chr11:8223600-8227600	Weak transcription	Left Ventricle	heart
25	chr11:8223600-8228000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:8223800-8224600	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr11:8223800-8224600	Enhancers	Brain Substantia Nigra	brain
28	chr11:8223800-8228000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:8224000-8224200	Flanking Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links