Variant report

Variant	rs189064735
Chromosome Location	chr10:116581047-116581048
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr10:116580617-116581604	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr10:116581009-116582855	HUVEC	blood vessel:	n/a	n/a
3	MXI1	chr10:116580831-116581578	Hela-S3	cervix:	n/a	n/a
4	CTCF	chr10:116581023-116581632	HCT-116	colon:	n/a	chr10:116581357-116581370 chr10:116581354-116581372 chr10:116581103-116581111
5	EGR1	chr10:116580863-116581775	HCT-116	colon:	n/a	chr10:116581423-116581437
6	MTA3	chr10:116580983-116581442	GM12878	blood:	n/a	n/a
7	MAX	chr10:116580995-116582037	A549	lung:	n/a	chr10:116581030-116581040
8	TFAP2C	chr10:116580686-116582467	Hela-S3	cervix:	n/a	chr10:116581448-116581463 chr10:116580836-116580851
9	POLR2A	chr10:116580785-116583141	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr10:116580751-116582873	Hela-S3	cervix:	n/a	n/a
11	CTCF	chr10:116580633-116581958	A549	lung:	n/a	chr10:116581357-116581370 chr10:116581354-116581372 chr10:116581103-116581111
12	MYC	chr10:116581042-116581933	NB4	blood:	n/a	n/a
13	MXI1	chr10:116580972-116582695	GM12878	blood:	n/a	n/a
14	HA-E2F1	chr10:116581028-116581485	MCF-7	breast:	n/a	n/a
15	POLR2A	chr10:116580835-116582908	MCF10A-Er-Src	breast:	n/a	n/a
16	TFAP2A	chr10:116580655-116582269	Hela-S3	cervix:	n/a	chr10:116580840-116580850 chr10:116582249-116582257 chr10:116582099-116582111 chr10:116582249-116582257 chr10:116582249-116582257 chr10:116582101-116582111 chr10:116581448-116581463 chr10:116581887-116581902 chr10:116580840-116580850
17	MXI1	chr10:116580731-116583291	SK-N-SH	brain:	n/a	n/a
18	TCF12	chr10:116580997-116581585	A549	lung:	n/a	chr10:116581154-116581163
19	MYC	chr10:116580961-116581341	MCF10A-Er-Src	breast:	n/a	chr10:116581030-116581040
20	CHD1	chr10:116580993-116583316	IMR90	lung:	n/a	chr10:116581716-116581726
21	MXI1	chr10:116580660-116583135	IMR90	lung:	n/a	n/a
22	MYC	chr10:116580723-116581636	MCF10A-Er-Src	breast:	n/a	chr10:116581030-116581040
23	MAX	chr10:116580934-116581554	NB4	blood:	n/a	chr10:116581030-116581040
24	EGR1	chr10:116581046-116581761	HCT-116	colon:	n/a	chr10:116581423-116581437

No.	Distal block	Cell Line	Cell type
1	chr10:116580811..116581705-chr8:27631902..27632494,2	Hela-S3	cervix:
2	chr10:116567584..116574580-chr10:116575101..116583231,11	MCF-7	breast:
3	chr10:116579148..116581126-chr10:116581176..116582786,3	MCF-7	breast:
4	chr10:116577691..116581134-chr10:116581459..116583772,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABLIM1-1	chr10:116581032-116581425	NONHSAT016464

Variant related genes	Relation type
FAM160B1	TF binding region
ENSG00000151553	Chromatin interaction
ENSG00000215760	Chromatin interaction
ENSG00000171320	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv518081	chr10:116576189-116582502	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3338822	chr10:116579462-116583960	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3407216	chr10:116580587-116583135	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv3343755	chr10:116580762-116583210	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116579400-116583600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:116579800-116583600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:116580200-116582200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:116580400-116581200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:116580600-116581200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:116580600-116581200	Enhancers	Primary hematopoietic stem cells	blood
7	chr10:116580600-116581200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:116580600-116581200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:116580600-116581200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:116580600-116581200	Flanking Active TSS	Osteobl	bone
11	chr10:116580600-116581400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr10:116580600-116581400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:116580600-116581400	Flanking Active TSS	Dnd41	blood
14	chr10:116580600-116581400	Flanking Active TSS	HUVEC	blood vessel
15	chr10:116580600-116581600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:116580600-116582800	Active TSS	NHEK	skin
17	chr10:116580600-116583000	Active TSS	Placenta Amnion	Placenta Amnion
18	chr10:116580600-116583600	Active TSS	GM12878-XiMat	blood
19	chr10:116580600-116583800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:116580600-116584600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:116580800-116581200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr10:116580800-116581200	Enhancers	Primary B cells from peripheral blood	blood
23	chr10:116580800-116581200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr10:116580800-116581400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:116580800-116582800	Active TSS	Hela-S3	cervix
26	chr10:116580800-116583000	Active TSS	Brain Angular Gyrus	brain
27	chr10:116580800-116583200	Active TSS	A549	lung
28	chr10:116580800-116583400	Active TSS	NH-A	brain
29	chr10:116580800-116584200	Active TSS	NHLF	lung
30	chr10:116580800-116584600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:116581000-116581200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr10:116581000-116581200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:116581000-116581200	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr10:116581000-116581200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr10:116581000-116581200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr10:116581000-116581200	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr10:116581000-116581200	Flanking Active TSS	Liver	Liver
38	chr10:116581000-116581200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr10:116581000-116581200	Flanking Active TSS	NHDF-Ad	bronchial
40	chr10:116581000-116581400	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr10:116581000-116581400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:116581000-116581400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:116581000-116581400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr10:116581000-116581400	Active TSS	Fetal Brain Male	brain
45	chr10:116581000-116581400	Flanking Active TSS	HMEC	breast
46	chr10:116581000-116581600	Active TSS	Brain Germinal Matrix	brain
47	chr10:116581000-116581800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:116581000-116582200	Active TSS	Primary T cells fromperipheralblood	blood
49	chr10:116581000-116582400	Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr10:116581000-116582400	Active TSS	Rectal Mucosa Donor 31	rectum

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