Variant report

Variant	rs1890739
Chromosome Location	chr10:45754173-45754174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1011388	0.91[EUR][1000 genomes]
rs10900192	0.91[EUR][1000 genomes]
rs10900193	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1122801	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11239406	0.89[EUR][1000 genomes]
rs11239411	0.91[EUR][1000 genomes]
rs11597509	0.92[EUR][1000 genomes]
rs1339749	0.96[ASN][1000 genomes]
rs1339750	0.97[ASN][1000 genomes]
rs1578204	0.96[ASN][1000 genomes]
rs1836467	0.91[EUR][1000 genomes]
rs1897891	0.91[EUR][1000 genomes]
rs1897892	0.91[EUR][1000 genomes]
rs2282350	0.96[ASN][1000 genomes]
rs34650304	0.91[EUR][1000 genomes]
rs4948662	0.91[EUR][1000 genomes]
rs4948974	0.95[ASN][1000 genomes]
rs4948975	0.96[ASN][1000 genomes]
rs4948979	0.91[EUR][1000 genomes]
rs4948983	0.91[EUR][1000 genomes]
rs4948984	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4948985	0.91[EUR][1000 genomes]
rs5006684	0.95[ASN][1000 genomes]
rs6593466	0.96[ASN][1000 genomes]
rs7079089	0.91[EUR][1000 genomes]
rs7086201	0.96[ASN][1000 genomes]
rs7476029	0.84[ASN][1000 genomes]
rs7894766	0.91[EUR][1000 genomes]
rs7898089	0.91[EUR][1000 genomes]
rs7909803	0.91[EUR][1000 genomes]
rs7910028	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv947610	chr10:45752231-45769447	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45752200-45756200	Weak transcription	K562	blood
2	chr10:45752800-45761800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:45754000-45754600	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links