Variant report

Variant	rs1890924
Chromosome Location	chr13:51737354-51737355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2011865	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408296	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4941692	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942967	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4942968	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4942969	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7319232	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73194160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8001016	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8001114	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs932807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563030	0.85[CEU][hapmap]
rs9596471	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv900079	chr13:51711436-51739168	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900080	chr13:51711436-51754873	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv977239	chr13:51733532-51738240	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51728200-51742600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:51729000-51749200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:51733400-51741400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:51733400-51743600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:51733600-51737600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:51733600-51741400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr13:51734000-51737800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:51734000-51737800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr13:51735800-51741200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr13:51736000-51739000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr13:51736000-51741400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr13:51736400-51737400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr13:51736600-51738600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr13:51737000-51738400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr13:51737000-51739400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr13:51737200-51737600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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