Variant report

Variant	rs1890937
Chromosome Location	chr1:213096950-213096951
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1890936	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6680409	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6680527	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72745808	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9308427	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008383	chr1:213025546-213114894	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1890937	FLVCR1-AS1	cis	lung	GTEx
rs1890937	LQK1	Cis_1M	lymphoblastoid	RTeQTL
rs1890937	FLVCR1-AS1	cis	Whole Blood	GTEx
rs1890937	FLVCR1	cis	Whole Blood	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213090600-213101800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:213090800-213101200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:213090800-213101200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:213090800-213101200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:213091800-213100400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:213092200-213098600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:213092200-213101400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:213092600-213098200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:213092800-213101200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:213093000-213098000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:213094800-213101400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:213095000-213098000	Weak transcription	HepG2	liver
13	chr1:213095000-213101400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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