Variant report

Variant	rs189097468
Chromosome Location	chr9:98815422-98815423
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv1809137	chr9:98798752-98823646	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv982606	chr9:98814728-98823757	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98810200-98823400	Weak transcription	Right Atrium	heart
2	chr9:98810200-98827200	Weak transcription	Aorta	Aorta
3	chr9:98811200-98815600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:98812200-98829600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:98812400-98818200	Weak transcription	Fetal Stomach	stomach
6	chr9:98812600-98818200	Weak transcription	Esophagus	oesophagus
7	chr9:98812800-98816000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:98812800-98818200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:98812800-98829400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:98813000-98818200	Weak transcription	Gastric	stomach
11	chr9:98813400-98818200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:98814600-98815600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:98814800-98815600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:98815000-98816000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:98815200-98824600	Weak transcription	Fetal Brain Male	brain
16	chr9:98815400-98816000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr9:98815400-98816200	Enhancers	Pancreas	Pancrea
18	chr9:98815400-98818200	Weak transcription	Fetal Lung	lung
19	chr9:98815400-98823400	Weak transcription	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links