The 2.0 version of rSNPBase

Variant report

Variant rs189104390
Chromosome Location chr2:233965851-233965852
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:233948600-233971800 Weak transcription Right Ventricle heart
2 chr2:233957600-233969200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr2:233958800-233977600 Weak transcription Left Ventricle heart
4 chr2:233961800-233966200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
5 chr2:233962600-233967200 Genic enhancers Primary hematopoietic stem cells blood
6 chr2:233962800-233967200 Enhancers Spleen Spleen
7 chr2:233964000-233966800 Enhancers Dnd41 blood
8 chr2:233964200-233966600 Enhancers Thymus Thymus
9 chr2:233964200-233967800 Enhancers Primary B cells from cord blood blood
10 chr2:233964200-233981600 Weak transcription Pancreas Pancrea
11 chr2:233964400-233966000 Flanking Active TSS GM12878-XiMat blood
12 chr2:233964400-233973200 Weak transcription Brain Cingulate Gyrus brain
13 chr2:233964600-233966600 Enhancers Fetal Thymus thymus
14 chr2:233964800-233966000 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
15 chr2:233964800-233966000 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
16 chr2:233964800-233966000 Strong transcription HepG2 liver
17 chr2:233965000-233966000 Transcr. at gene 5' and 3' Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr2:233965200-233966000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
19 chr2:233965400-233966000 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
20 chr2:233965400-233966000 Enhancers Duodenum Mucosa Duodenum
21 chr2:233965400-233966000 Enhancers Rectal Mucosa Donor 29 rectum
22 chr2:233965400-233966200 Enhancers Primary T helper cells fromperipheralblood blood
23 chr2:233965400-233967000 Enhancers Primary Natural Killer cells fromperipheralblood blood
24 chr2:233965400-233967000 Weak transcription Colonic Mucosa Colon
25 chr2:233965600-233966000 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
26 chr2:233965600-233966000 Genic enhancers Primary mononuclear cells fromperipheralblood Blood
27 chr2:233965600-233966400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
28 chr2:233965600-233975400 Enhancers Primary T helper naive cells fromperipheralblood blood
29 chr2:233965800-233966000 Transcr. at gene 5' and 3' Primary B cells from peripheral blood blood
30 chr2:233965800-233966000 Flanking Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
31 chr2:233965800-233966200 Enhancers Primary neutrophils fromperipheralblood blood
32 chr2:233965800-233966200 Genic enhancers Primary T cells from cord blood blood
33 chr2:233965800-233966200 Enhancers Primary T regulatory cells fromperipheralblood blood
34 chr2:233965800-233966600 Enhancers Primary T cells fromperipheralblood blood
35 chr2:233965800-233967800 Weak transcription Esophagus oesophagus
36 chr2:233965800-233967800 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr2:233965800-233968200 Genic enhancers Primary hematopoietic stem cells short term culture blood
38 chr2:233965800-233969000 Weak transcription Brain Hippocampus Middle brain
39 chr2:233965800-233969600 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr2:233965800-233970200 Strong transcription Primary monocytes fromperipheralblood blood
41 chr2:233965800-233971600 Strong transcription Monocytes-CD14+_RO01746 blood
42 chr2:233965800-233988200 Weak transcription HUVEC blood vessel

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Last update: Aug 31, 2015