Variant report

Variant	rs1891133
Chromosome Location	chr6:120058070-120058071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17081461	1.00[AMR][1000 genomes]
rs17081480	1.00[AMR][1000 genomes]
rs17081519	0.86[AFR][1000 genomes]
rs59518154	1.00[AMR][1000 genomes]
rs6922043	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1028580	chr6:120032073-120095538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120056000-120059000	Enhancers	Fetal Stomach	stomach
2	chr6:120056200-120058200	Enhancers	Fetal Lung	lung
3	chr6:120056600-120058200	Enhancers	Rectal Smooth Muscle	rectum
4	chr6:120056800-120059800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:120057000-120060800	Enhancers	Fetal Brain Male	brain
6	chr6:120057400-120058200	Enhancers	Brain Angular Gyrus	brain
7	chr6:120057400-120058200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:120057400-120058400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:120057600-120058200	Enhancers	Brain Germinal Matrix	brain
10	chr6:120057600-120058400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:120057600-120058400	Enhancers	Brain Hippocampus Middle	brain
12	chr6:120057600-120059400	Weak transcription	Fetal Brain Female	brain
13	chr6:120057800-120058200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:120057800-120058200	Enhancers	Fetal Thymus	thymus
15	chr6:120057800-120058200	Enhancers	Pancreas	Pancrea
16	chr6:120057800-120058200	Enhancers	Stomach Smooth Muscle	stomach
17	chr6:120058000-120058200	Enhancers	Colon Smooth Muscle	Colon
18	chr6:120058000-120060600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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