Variant report

Variant	rs1891420
Chromosome Location	chr1:57332855-57332856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11802385	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11804514	0.88[ASN][1000 genomes]
rs17114468	0.94[ASN][1000 genomes]
rs17372542	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1754519	0.88[ASN][1000 genomes]
rs2405237	0.84[EUR][1000 genomes]
rs58164188	0.94[ASN][1000 genomes]
rs927214	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv508215	chr1:57319460-57351150	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57324400-57339000	Weak transcription	HepG2	liver
2	chr1:57330600-57333200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:57332200-57333000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:57332200-57333400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:57332200-57333600	Enhancers	NHEK	skin
6	chr1:57332200-57333600	Enhancers	NHLF	lung
7	chr1:57332200-57333800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:57332200-57334600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:57332200-57336000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:57332400-57343000	Strong transcription	Liver	Liver
11	chr1:57332600-57333000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:57332600-57334400	Enhancers	Osteobl	bone
13	chr1:57332600-57336200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:57332600-57336200	Enhancers	NHDF-Ad	bronchial
15	chr1:57332800-57334400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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