Variant report

Variant	rs189149402
Chromosome Location	chr8:11487646-11487647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1017865	chr8:11377795-11579954	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv1807593	chr8:11487630-11495441	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11482200-11491000	Enhancers	Pancreas	Pancrea
2	chr8:11483400-11488600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:11483600-11488400	Weak transcription	Spleen	Spleen
4	chr8:11483600-11488600	Weak transcription	Right Atrium	heart
5	chr8:11483600-11488600	Weak transcription	Right Ventricle	heart
6	chr8:11485000-11491400	Enhancers	Fetal Intestine Small	intestine
7	chr8:11485200-11487800	Enhancers	Duodenum Mucosa	Duodenum
8	chr8:11485200-11487800	Enhancers	Gastric	stomach
9	chr8:11485200-11490800	Enhancers	Liver	Liver
10	chr8:11485200-11491000	Enhancers	Stomach Mucosa	stomach
11	chr8:11485600-11491400	Enhancers	Ovary	ovary
12	chr8:11486400-11488600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:11486800-11488600	Enhancers	HepG2	liver
14	chr8:11487200-11488400	Enhancers	Fetal Heart	heart
15	chr8:11487200-11488600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:11487400-11488400	Weak transcription	Fetal Kidney	kidney
17	chr8:11487600-11488800	Weak transcription	Fetal Intestine Large	intestine
18	chr8:11487600-11491000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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