Variant report

Variant	rs189150032
Chromosome Location	chr5:114730837-114730838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv2757132	chr5:114697260-114737583	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2759370	chr5:114697260-114737583	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv3374677	chr5:114730653-114732626	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
6	esv2481947	chr5:114730681-114732326	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114728400-114731200	Enhancers	Stomach Mucosa	stomach
2	chr5:114729000-114731800	Weak transcription	Osteobl	bone
3	chr5:114729200-114732000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr5:114729400-114731800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:114729400-114734200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:114729600-114731000	Enhancers	Colonic Mucosa	Colon
7	chr5:114729600-114737000	Weak transcription	NHLF	lung
8	chr5:114730000-114731000	Weak transcription	Gastric	stomach
9	chr5:114730000-114731000	Weak transcription	Lung	lung
10	chr5:114730000-114731000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:114730000-114732000	Weak transcription	NHDF-Ad	bronchial
12	chr5:114730000-114737800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:114730400-114731000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:114730600-114731200	Enhancers	Duodenum Mucosa	Duodenum
15	chr5:114730800-114731200	Enhancers	Fetal Intestine Large	intestine
16	chr5:114730800-114731200	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr5:114730800-114731200	Enhancers	Small Intestine	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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