Variant report

Variant	rs1891740
Chromosome Location	chr1:224279663-224279664
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10916370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[TSI][hapmap]
rs11576702	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs11582248	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs11584872	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12410321	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs12722938	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[TSI][hapmap]
rs12731770	0.84[CEU][hapmap]
rs12737029	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1492695	0.92[EUR][1000 genomes]
rs1492696	0.94[EUR][1000 genomes]
rs16844823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[TSI][hapmap]
rs16856443	0.81[EUR][1000 genomes]
rs2008340	0.87[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.89[LWK][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap]
rs35243286	0.81[EUR][1000 genomes]
rs36037699	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4653926	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757772	chr1:223935220-224363163	Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2759000	chr1:223935220-224363163	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv427941	chr1:224085052-224363163	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv832692	chr1:224206536-224407717	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224275400-224282600	Weak transcription	Stomach Mucosa	stomach
2	chr1:224279600-224279800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:224279600-224280200	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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