Variant report

Variant	rs189174116
Chromosome Location	chr1:57050523-57050524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:57050265..57050916-chr1:57286447..57287375,2	MCF-7	breast:
2	chr1:55750289..55751004-chr1:57050246..57051040,3	MCF-7	breast:
3	chr1:55751139..55751909-chr1:57050295..57051207,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv528673	chr1:57048961-57059571	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57045400-57050800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:57045400-57051800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:57046000-57050800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:57046200-57051400	Weak transcription	Osteobl	bone
5	chr1:57048000-57050800	Weak transcription	Liver	Liver
6	chr1:57048000-57056000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:57050200-57050600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:57050200-57050600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:57050200-57050600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:57050200-57050600	Enhancers	Brain Hippocampus Middle	brain
11	chr1:57050200-57050600	Enhancers	NHLF	lung
12	chr1:57050200-57050800	Enhancers	Fetal Lung	lung
13	chr1:57050200-57052000	Enhancers	NHDF-Ad	bronchial
14	chr1:57050200-57052400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:57050400-57050600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr1:57050400-57050600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:57050400-57050600	Enhancers	A549	lung
18	chr1:57050400-57050800	Weak transcription	HepG2	liver
19	chr1:57050400-57051000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr1:57050400-57051000	Enhancers	Brain Cingulate Gyrus	brain
21	chr1:57050400-57051000	Enhancers	HSMM	muscle
22	chr1:57050400-57052000	Enhancers	Muscle Satellite Cultured Cells	--

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