Variant report

Variant	rs189184071
Chromosome Location	chr6:37672802-37672803
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37650720..37654671-chr6:37670149..37673658,3	MCF-7	breast:
2	chr6:37670172..37672824-chr6:37782516..37784751,2	K562	blood:
3	chr6:37668297..37671248-chr6:37671352..37673734,2	K562	blood:
4	chr6:37669043..37673675-chr6:37673911..37678816,5	K562	blood:
5	chr6:37666178..37668975-chr6:37671383..37675389,6	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFAND3-6	chr6:37672600-37674014	NONHSAT112283

Variant related genes	Relation type
ENSG00000112139	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv994460	chr6:37672682-37686270	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37671800-37673200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:37671800-37674000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:37672000-37673200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:37672400-37673000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:37672600-37673000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:37672600-37673000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:37672600-37673000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:37672600-37673000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:37672600-37673000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:37672600-37673000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr6:37672600-37673000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr6:37672600-37673000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
13	chr6:37672600-37673000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:37672600-37673000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:37672600-37673000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr6:37672600-37673000	Flanking Active TSS	NHDF-Ad	bronchial
17	chr6:37672600-37673200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:37672600-37673200	Bivalent Enhancer	Stomach Mucosa	stomach
19	chr6:37672600-37673200	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr6:37672600-37673200	Flanking Active TSS	Osteobl	bone
21	chr6:37672600-37673400	Flanking Active TSS	NHLF	lung
22	chr6:37672600-37673800	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr6:37672600-37673800	Active TSS	H1 Cell Line	embryonic stem cell
24	chr6:37672600-37673800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:37672600-37673800	Active TSS	Brain Angular Gyrus	brain
26	chr6:37672600-37673800	Active TSS	Fetal Brain Female	brain
27	chr6:37672600-37674000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:37672600-37674000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:37672800-37673000	Flanking Active TSS	H9 Cell Line	embryonic stem cell
30	chr6:37672800-37673000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:37672800-37673000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:37672800-37673000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:37672800-37673000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:37672800-37673000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:37672800-37673000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:37672800-37673000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr6:37672800-37673000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
38	chr6:37672800-37673000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
39	chr6:37672800-37673000	Flanking Active TSS	Primary T cells from cord blood	blood
40	chr6:37672800-37673000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:37672800-37673000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
42	chr6:37672800-37673000	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr6:37672800-37673000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:37672800-37673000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:37672800-37673000	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr6:37672800-37673000	Flanking Active TSS	Brain Substantia Nigra	brain
47	chr6:37672800-37673000	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
48	chr6:37672800-37673000	Flanking Active TSS	Colon Smooth Muscle	Colon
49	chr6:37672800-37673000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
50	chr6:37672800-37673000	Enhancers	Esophagus	oesophagus

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