Variant report

Variant	rs1891877
Chromosome Location	chr10:22978029-22978030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22964242..22966769-chr10:22976962..22978693,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1891877	PIP4K2A	cis	parietal	SCAN

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22959200-22980000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:22961800-22979600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:22970600-22989000	Weak transcription	Esophagus	oesophagus
4	chr10:22972600-22978400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:22972600-22978400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:22972600-22979000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr10:22972600-22983600	Enhancers	Brain Substantia Nigra	brain
8	chr10:22972600-23000200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr10:22972800-22978200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:22972800-22990000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:22972800-22999400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:22973000-22978200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:22973000-22978400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:22973000-22988200	Weak transcription	Aorta	Aorta
15	chr10:22973000-22990000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:22973000-22997600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:22973000-22999200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr10:22973200-22979600	Weak transcription	Osteobl	bone
19	chr10:22973200-22981600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:22973200-22987400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr10:22973200-22989400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr10:22973600-22978200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:22973800-22978200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:22973800-22978600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr10:22973800-22979400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:22973800-22979600	Weak transcription	HMEC	breast
27	chr10:22973800-22979800	Weak transcription	Pancreas	Pancrea
28	chr10:22973800-22985800	Weak transcription	Fetal Heart	heart
29	chr10:22974000-22979400	Weak transcription	Liver	Liver
30	chr10:22974000-22979400	Weak transcription	Fetal Lung	lung
31	chr10:22974000-22979600	Weak transcription	NHLF	lung
32	chr10:22974000-22979800	Weak transcription	Primary B cells from cord blood	blood
33	chr10:22974000-22985400	Weak transcription	Colon Smooth Muscle	Colon
34	chr10:22974600-22979800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:22974600-22980000	Weak transcription	Stomach Mucosa	stomach
36	chr10:22974600-22980600	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr10:22974600-22982600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr10:22974800-22979800	Weak transcription	Lung	lung
39	chr10:22974800-22979800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr10:22974800-22980000	Weak transcription	Small Intestine	intestine
41	chr10:22974800-22981000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:22974800-22981200	Weak transcription	Right Atrium	heart
43	chr10:22974800-22988200	Weak transcription	Duodenum Mucosa	Duodenum
44	chr10:22974800-22988400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr10:22975000-22979800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:22975000-22980000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:22975000-22982600	Weak transcription	Gastric	stomach
48	chr10:22975200-22978200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr10:22975200-22978400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:22975200-22979400	Weak transcription	Primary hematopoietic stem cells	blood

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