Variant report

Variant	rs189189813
Chromosome Location	chr9:97136307-97136308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:33)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:33 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr9:97136264-97137173	IMR90	lung:	n/a	n/a
2	POLR2A	chr9:97136305-97137053	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr9:97136261-97137036	SK-N-SH	brain:	n/a	n/a
4	POLR2A	chr9:97136250-97137863	K562	blood:	n/a	n/a
5	POLR2A	chr9:97136245-97137011	PFSK-1	brain:	n/a	n/a
6	SIX5	chr9:97136247-97136862	A549	lung:	n/a	n/a
7	POLR2A	chr9:97136136-97137914	SK-N-MC	brain:	n/a	n/a
8	POLR2A	chr9:97136214-97137002	HUVEC	blood vessel:	n/a	n/a
9	POLR2A	chr9:97136205-97137919	GM12892	blood:	n/a	n/a
10	MXI1	chr9:97136170-97137199	SK-N-SH	brain:	n/a	n/a
11	NFIC	chr9:97136207-97136843	GM12878	blood:	n/a	n/a
12	POLR2A	chr9:97136285-97137006	HepG2	liver:	n/a	n/a
13	POLR2A	chr9:97136208-97138019	GM12892	blood:	n/a	n/a
14	POLR2A	chr9:97136305-97136985	GM12891	blood:	n/a	n/a
15	GABPA	chr9:97136248-97136964	A549	lung:	n/a	n/a
16	POLR2A	chr9:97136140-97137947	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr9:97136271-97137747	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr9:97136263-97137918	MCF-7	breast:	n/a	n/a
19	TAF1	chr9:97136254-97136997	A549	lung:	n/a	n/a
20	POLR2A	chr9:97136143-97137236	PFSK-1	brain:	n/a	n/a
21	GABPA	chr9:97136196-97136997	MCF-7	breast:	n/a	n/a
22	POLR2A	chr9:97136263-97137061	U87	brain:	n/a	n/a
23	POLR2A	chr9:97136290-97137933	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr9:97136173-97139540	GM12878	blood:	n/a	n/a
25	POLR2A	chr9:97136239-97137948	GM12891	blood:	n/a	n/a
26	POLR2A	chr9:97136177-97137213	HUVEC	blood vessel:	n/a	n/a
27	HCFC1	chr9:97136176-97137002	Hela-S3	cervix:	n/a	n/a
28	HEY1	chr9:97136257-97137113	HepG2	liver:	n/a	chr9:97136834-97136849 chr9:97136778-97136793
29	POLR2A	chr9:97136175-97136974	U87	brain:	n/a	n/a
30	PML	chr9:97136246-97136994	GM12878	blood:	n/a	n/a
31	POLR2A	chr9:97135977-97138825	GM12878	blood:	n/a	n/a
32	POLR2A	chr9:97136282-97137148	PANC-1	pancreas:	n/a	n/a
33	POLR2A	chr9:97135943-97137137	HepG2	liver:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97135317..97137962-chr9:99774801..99776499,2	MCF-7	breast:

No data

Variant related genes	Relation type
HIATL1	TF binding region
ENSG00000196312	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv982323	chr9:97125305-97137721	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3409559	chr9:97135656-97138504	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97136000-97137800	Active TSS	Primary T helper cells fromperipheralblood	blood
2	chr9:97136000-97138000	Active TSS	Primary monocytes fromperipheralblood	blood
3	chr9:97136000-97138400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:97136200-97136400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr9:97136200-97136400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr9:97136200-97136600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
7	chr9:97136200-97136600	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr9:97136200-97136600	Active TSS	Primary T killer memory cells from peripheral blood	blood
9	chr9:97136200-97136600	Active TSS	Fetal Brain Male	brain
10	chr9:97136200-97136600	Active TSS	Fetal Heart	heart
11	chr9:97136200-97136600	Flanking Active TSS	Fetal Muscle Leg	muscle
12	chr9:97136200-97137000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr9:97136200-97137000	Active TSS	Brain Substantia Nigra	brain
14	chr9:97136200-97137800	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr9:97136200-97137800	Active TSS	Primary B cells from peripheral blood	blood
16	chr9:97136200-97137800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr9:97136200-97137800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:97136200-97137800	Active TSS	Brain Anterior Caudate	brain
19	chr9:97136200-97137800	Active TSS	Brain Hippocampus Middle	brain
20	chr9:97136200-97137800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:97136200-97137800	Active TSS	Colonic Mucosa	Colon
22	chr9:97136200-97137800	Active TSS	Placenta	Placenta
23	chr9:97136200-97137800	Active TSS	Ovary	ovary
24	chr9:97136200-97137800	Active TSS	Sigmoid Colon	Sigmoid Colon
25	chr9:97136200-97138000	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr9:97136200-97138000	Active TSS	H1 Cell Line	embryonic stem cell
27	chr9:97136200-97138000	Active TSS	H9 Cell Line	embryonic stem cell
28	chr9:97136200-97138000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:97136200-97138000	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr9:97136200-97138000	Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr9:97136200-97138000	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr9:97136200-97138000	Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr9:97136200-97138000	Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr9:97136200-97138000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr9:97136200-97138000	Active TSS	Primary B cells from cord blood	blood
36	chr9:97136200-97138000	Active TSS	Primary T cells from cord blood	blood
37	chr9:97136200-97138000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
38	chr9:97136200-97138000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr9:97136200-97138000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
40	chr9:97136200-97138000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr9:97136200-97138000	Active TSS	Adipose Nuclei	Adipose
42	chr9:97136200-97138000	Active TSS	Liver	Liver
43	chr9:97136200-97138000	Active TSS	Brain Cingulate Gyrus	brain
44	chr9:97136200-97138000	Active TSS	Brain Germinal Matrix	brain
45	chr9:97136200-97138000	Active TSS	Brain Inferior Temporal Lobe	brain
46	chr9:97136200-97138000	Active TSS	Colon Smooth Muscle	Colon
47	chr9:97136200-97138000	Active TSS	Duodenum Mucosa	Duodenum
48	chr9:97136200-97138000	Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr9:97136200-97138000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
50	chr9:97136200-97138000	Active TSS	Fetal Brain Female	brain

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