Variant report

Variant	rs189190969
Chromosome Location	chr15:43661051-43661052
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:43660982-43661711	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43660016..43662796-chr15:43702586..43705983,3	K562	blood:
2	chr15:43632397..43634657-chr15:43658728..43661211,2	K562	blood:

Variant related genes	Relation type
TUBGCP4	TF binding region
ENSG00000067369	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1512	chr15:43616834-43661646	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
4	esv2618501	chr15:43659722-43661347	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43650200-43661600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:43650600-43661400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:43654000-43661200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:43654000-43661200	Strong transcription	Placenta	Placenta
5	chr15:43654400-43662000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:43654600-43661800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:43654800-43661200	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr15:43654800-43661400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:43654800-43661800	Strong transcription	HSMM	muscle
10	chr15:43655200-43661400	Strong transcription	NHDF-Ad	bronchial
11	chr15:43656000-43661400	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:43656000-43661600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:43656200-43661600	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:43656400-43661800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:43656600-43661200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr15:43656600-43661200	Strong transcription	Fetal Muscle Trunk	muscle
17	chr15:43656600-43661400	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr15:43656600-43661800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:43656800-43661800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:43656800-43661800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr15:43657800-43661800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:43658000-43661400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:43658800-43661200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr15:43658800-43661800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:43659000-43661600	Weak transcription	Brain Substantia Nigra	brain
26	chr15:43659200-43661400	Weak transcription	HSMMtube	muscle
27	chr15:43659200-43662200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:43659600-43661400	Weak transcription	Colon Smooth Muscle	Colon
29	chr15:43659800-43661200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr15:43659800-43661200	Weak transcription	Pancreas	Pancrea
31	chr15:43659800-43661600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr15:43659800-43661800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr15:43659800-43661800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr15:43659800-43661800	Enhancers	Fetal Heart	heart
35	chr15:43659800-43662000	Weak transcription	Aorta	Aorta
36	chr15:43659800-43662000	Weak transcription	Esophagus	oesophagus
37	chr15:43660000-43661200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:43660000-43661200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr15:43660000-43661200	Weak transcription	Brain Anterior Caudate	brain
40	chr15:43660000-43661200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr15:43660000-43661200	Weak transcription	HUVEC	blood vessel
42	chr15:43660000-43661600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr15:43660000-43661600	Genic enhancers	Monocytes-CD14+_RO01746	blood
44	chr15:43660000-43661800	Weak transcription	NHLF	lung
45	chr15:43660000-43662000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr15:43660000-43662000	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr15:43660000-43662000	Weak transcription	NH-A	brain
48	chr15:43660000-43662000	Weak transcription	Osteobl	bone
49	chr15:43660000-43662200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr15:43660200-43661400	Enhancers	HepG2	liver

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