Variant report

Variant	rs1891965
Chromosome Location	chr13:110881846-110881847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1891966	0.84[EUR][1000 genomes]
rs2298238	1.00[JPT][hapmap]
rs3737325	1.00[CEU][hapmap]
rs3742205	1.00[CEU][hapmap]
rs616089	1.00[JPT][hapmap]
rs9555684	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110866200-110882400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:110866400-110885000	Weak transcription	Fetal Intestine Large	intestine
3	chr13:110869000-110898800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:110869400-110883600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:110869800-110883200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:110871200-110883400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr13:110874800-110883400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:110876400-110884600	Weak transcription	Aorta	Aorta
9	chr13:110878000-110882400	Enhancers	NHLF	lung
10	chr13:110878200-110882800	Enhancers	Fetal Heart	heart
11	chr13:110878600-110883200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr13:110878800-110885000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:110879000-110884600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr13:110879000-110885000	Weak transcription	Osteobl	bone
15	chr13:110879000-110888400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:110879000-110889200	Weak transcription	Fetal Intestine Small	intestine
17	chr13:110879600-110882400	Enhancers	Adipose Nuclei	Adipose
18	chr13:110879600-110882800	Enhancers	NHDF-Ad	bronchial
19	chr13:110879600-110890000	Weak transcription	Fetal Kidney	kidney
20	chr13:110879800-110882400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr13:110879800-110882600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr13:110879800-110883000	Enhancers	Lung	lung
23	chr13:110879800-110883400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr13:110880000-110884400	Enhancers	Placenta	Placenta
25	chr13:110880200-110883600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr13:110880200-110884400	Weak transcription	Fetal Lung	lung
27	chr13:110880200-110884600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr13:110880400-110882000	Weak transcription	Fetal Stomach	stomach
29	chr13:110880400-110883800	Weak transcription	Psoas Muscle	Psoas
30	chr13:110880400-110883800	Weak transcription	HUVEC	blood vessel
31	chr13:110880600-110882000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr13:110880600-110882000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr13:110880600-110882200	Weak transcription	Ovary	ovary
34	chr13:110880600-110882600	Weak transcription	Colon Smooth Muscle	Colon
35	chr13:110880800-110882000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr13:110880800-110882800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr13:110880800-110885400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr13:110881000-110882000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr13:110881000-110882400	Weak transcription	Right Ventricle	heart
40	chr13:110881000-110882600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr13:110881000-110883400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr13:110881200-110882600	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr13:110881400-110882600	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr13:110881400-110883000	Enhancers	NH-A	brain
45	chr13:110881400-110894800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr13:110881400-110899800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr13:110881600-110882000	Weak transcription	HSMMtube	muscle
48	chr13:110881600-110882200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr13:110881600-110882200	Enhancers	Muscle Satellite Cultured Cells	--
50	chr13:110881600-110882400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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