Variant report

Variant	rs189198378
Chromosome Location	chr19:51901241-51901242
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:51899936..51901714-chr19:51903662..51905445,2	MCF-7	breast:
2	chr19:51896400..51903695-chr19:51903717..51912186,11	K562	blood:
3	chr19:51842083..51843641-chr19:51899857..51902542,2	MCF-7	breast:
4	chr19:51869222..51871840-chr19:51900203..51903169,2	MCF-7	breast:
5	chr19:51864453..51872845-chr19:51892428..51902096,29	K562	blood:
6	chr19:51895771..51899587-chr19:51899591..51905302,6	K562	blood:
7	chr19:51896327..51899206-chr19:51900445..51903528,4	K562	blood:

Variant related genes	Relation type
ENSG00000268520	Chromatin interaction
ENSG00000105379	Chromatin interaction
ENSG00000268144	Chromatin interaction
ENSG00000186806	Chromatin interaction
ENSG00000160318	Chromatin interaction
ENSG00000269403	Chromatin interaction
ENSG00000268889	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv978836	chr19:51899668-51906513	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv3450535	chr19:51900814-51905829	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51898400-51903000	Weak transcription	Fetal Brain Male	brain
2	chr19:51898400-51904000	Weak transcription	Fetal Brain Female	brain
3	chr19:51898600-51903200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr19:51898800-51903800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr19:51898800-51905400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr19:51899000-51901800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr19:51899000-51903000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:51899000-51903000	Weak transcription	Fetal Thymus	thymus
9	chr19:51899000-51904200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr19:51899000-51904800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr19:51899000-51904800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr19:51899000-51904800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr19:51899000-51905000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr19:51899000-51905200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr19:51899000-51906600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr19:51899000-51911000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr19:51899400-51903000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr19:51899400-51903800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr19:51899600-51903600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr19:51899800-51901600	Enhancers	K562	blood
21	chr19:51899800-51902800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr19:51900800-51902000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr19:51901000-51901400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr19:51901000-51901600	Enhancers	HepG2	liver
25	chr19:51901200-51901400	Enhancers	Primary T cells fromperipheralblood	blood
26	chr19:51901200-51901800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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