Variant report

Variant	rs189224407
Chromosome Location	chr4:27918125-27918126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013877	chr4:27539626-28051576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv984567	chr4:27887719-27919643	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	nsv4282	chr4:27914655-27959474	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27917000-27923600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:27917200-27919800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:27917400-27918600	Enhancers	Brain Hippocampus Middle	brain
4	chr4:27918000-27918600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:27918000-27919200	Enhancers	Brain Cingulate Gyrus	brain
6	chr4:27918000-27919200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr4:27918000-27919600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:27918000-27919600	Enhancers	Brain Angular Gyrus	brain
9	chr4:27918000-27919800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:27918000-27920400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:27918000-27921400	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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