Variant report

Variant	rs189229283
Chromosome Location	chr13:50501215-50501216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50495816..50497958-chr13:50500274..50502867,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851738	chr13:50474326-50507944	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv976235	chr13:50501048-50509556	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50479600-50508600	Weak transcription	K562	blood
2	chr13:50480800-50508800	Weak transcription	Fetal Brain Male	brain
3	chr13:50481800-50509600	Weak transcription	Right Ventricle	heart
4	chr13:50482600-50509600	Weak transcription	Primary B cells from cord blood	blood
5	chr13:50484000-50509600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:50484400-50501800	Weak transcription	HSMMtube	muscle
7	chr13:50484400-50509400	Weak transcription	Fetal Kidney	kidney
8	chr13:50484600-50509600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr13:50485800-50501800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:50485800-50506200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:50485800-50509200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr13:50486000-50503400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr13:50486000-50503400	Strong transcription	Liver	Liver
14	chr13:50486000-50509400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr13:50486400-50509600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr13:50486600-50508800	Weak transcription	Hela-S3	cervix
17	chr13:50487400-50509400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr13:50487600-50509400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr13:50488400-50509600	Weak transcription	Colonic Mucosa	Colon
20	chr13:50489200-50509600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr13:50489200-50510000	Weak transcription	Spleen	Spleen
22	chr13:50489600-50502400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:50489600-50503200	Strong transcription	Adipose Nuclei	Adipose
24	chr13:50489600-50504200	Strong transcription	Fetal Intestine Large	intestine
25	chr13:50490000-50501400	Weak transcription	Fetal Thymus	thymus
26	chr13:50490200-50502800	Strong transcription	Duodenum Mucosa	Duodenum
27	chr13:50490200-50503000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr13:50490800-50502000	Weak transcription	Primary T cells from cord blood	blood
29	chr13:50490800-50506200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr13:50491200-50507000	Weak transcription	Brain Angular Gyrus	brain
31	chr13:50492200-50504600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr13:50492200-50509400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr13:50492400-50509600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr13:50492600-50508800	Weak transcription	HUVEC	blood vessel
35	chr13:50492800-50509400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr13:50492800-50509600	Weak transcription	Aorta	Aorta
37	chr13:50493400-50502000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr13:50493400-50509400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr13:50493800-50509600	Weak transcription	Lung	lung
40	chr13:50494000-50502800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr13:50494200-50508800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr13:50494400-50508800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr13:50495400-50509600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr13:50495600-50501800	Weak transcription	Ovary	ovary
45	chr13:50495800-50501600	Weak transcription	NH-A	brain
46	chr13:50495800-50508400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr13:50495800-50508800	Weak transcription	Brain Substantia Nigra	brain
48	chr13:50495800-50508800	Weak transcription	Fetal Brain Female	brain
49	chr13:50495800-50508800	Weak transcription	HepG2	liver
50	chr13:50496000-50501800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links