Variant report

Variant	rs189229451
Chromosome Location	chr10:99345618-99345619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:99344671-99345657	HepG2	liver:	n/a	chr10:99345024-99345037 chr10:99345026-99345035 chr10:99345026-99345035

No.	Distal block	Cell Line	Cell type
1	chr10:99345242..99348489-chr10:99349078..99351813,3	K562	blood:
2	chr10:99329733..99337149-chr10:99338392..99346753,19	MCF-7	breast:
3	chr10:99342912..99345937-chr10:99348140..99351473,3	K562	blood:

Variant related genes	Relation type
C10orf62	TF binding region
ENSG00000165887	Chromatin interaction
ENSG00000203942	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv818782	chr10:99337572-99350128	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv971896	chr10:99338341-99349551	Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv975816	chr10:99344579-99354694	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99336000-99348800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:99343000-99346600	Enhancers	Fetal Heart	heart
3	chr10:99343400-99346400	Enhancers	Adipose Nuclei	Adipose
4	chr10:99343400-99346600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:99343600-99345800	Enhancers	Placenta	Placenta
6	chr10:99344000-99349000	Weak transcription	Fetal Stomach	stomach
7	chr10:99344200-99346600	Flanking Active TSS	Liver	Liver
8	chr10:99344200-99347000	Enhancers	Right Atrium	heart
9	chr10:99344200-99348800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:99344600-99346400	Active TSS	Fetal Kidney	kidney
11	chr10:99344600-99346800	Enhancers	Brain Hippocampus Middle	brain
12	chr10:99344800-99346200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr10:99344800-99348800	Weak transcription	Fetal Intestine Small	intestine
14	chr10:99344800-99349000	Weak transcription	Brain Angular Gyrus	brain
15	chr10:99344800-99349600	Weak transcription	Fetal Intestine Large	intestine
16	chr10:99345000-99347000	Enhancers	Brain Substantia Nigra	brain
17	chr10:99345000-99347000	Enhancers	A549	lung
18	chr10:99345000-99348600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:99345200-99345800	Flanking Active TSS	Pancreas	Pancrea
20	chr10:99345200-99346600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:99345200-99348800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:99345400-99345800	Enhancers	Aorta	Aorta
23	chr10:99345400-99347200	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr10:99345400-99353400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:99345600-99346000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr10:99345600-99346000	Enhancers	HepG2	liver
27	chr10:99345600-99346200	Active TSS	Left Ventricle	heart
28	chr10:99345600-99347000	Active TSS	Right Ventricle	heart
29	chr10:99345600-99348800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:99345600-99348800	Weak transcription	Brain Anterior Caudate	brain
31	chr10:99345600-99348800	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:99345600-99349000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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